Hyperoodon ampullatus (northern bottlenose whale): 307060850
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Entry
307060850 CDS
T11951
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform 1
KO
K19719
collagen type II alpha
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04151
PI3K-Akt signaling pathway
hamp04510
Focal adhesion
hamp04512
ECM-receptor interaction
hamp04518
Integrin signaling
hamp04974
Protein digestion and absorption
hamp05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
307060850 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
307060850 (COL2A1)
04518 Integrin signaling
307060850 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
307060850 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
307060850 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
307060850 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hamp00536
]
307060850 (COL2A1)
Glycosaminoglycan binding proteins [BR:
hamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
307060850 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
307060850
NCBI-ProteinID:
XP_079571788
LinkDB
All DBs
Position
11:complement(<54180390..>54210953)
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AA seq
1488 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLTTASGRQPGPKGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPM
GPRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGSDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGVGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGTRGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPR
GLPGTPGTDGPKGAAGPGGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEP
GDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPA
GPVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGTSGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADEAAGNLRQHDAEVDATL
KSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDT
GETCVYPSPASVPKKNWWNSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCT
KHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcaccactgccagtggtcggcaa
ccaggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaa
ggacctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgac
aaaggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctggaacccctgga
aaccctggcccccctggccctcctggcccccctggcccccctggtcttggtggaaacttt
gctgctcagatggctggaggatttgatgagaaggctggtggcgcccagttgggagtaatg
cagggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccgga
cctcaaggatttcaaggcaatcctggtgaacctggggaacccggcgttgctggtcccatg
ggtccccgcggtccttctggcccccctggaaaacctggtgacgatggtgaagctggaaag
gctggaaaacctggcgagagaggccttcctggtcctcagggtgctcgcggcttcccagga
accccaggccttcctggtgtcaaaggacacagaggttacccaggtctagatggtgctaag
ggagaagctggtgctccaggtgtgaagggtgagagtggctccccaggagagaacggttct
ccaggcccaatgggtccccgtggcctgcctggtgagagaggacggactggccctgctggc
gctgcgggtgctcggggcaacgatgggcaacccggccctgcagggcctccgggtcccgtg
ggtcctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggcccc
accggtgctcgaggtcctgaaggtgcccaaggtcctcgcggtgaatctggtactcctggg
tcccccgggccggctggtgcctctggtaaccctggatcggatggaattcctggagctaaa
ggatctgctggtgcccctggcattgctggtgctcccggcttccctgggccccgtggtcca
cccggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggt
attgctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaa
ggagcccctggtcctgctggtgaagaaggcaaaagaggggcccgtggagagcctggtggt
gttgggcccgctggtccccctggagaaagaggtgctcctggcaaccgtgggttcccaggt
caggatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggccttgct
ggtcccaagggagccaatggtgaccctggccgtcctggagaacctggcctccctggagcc
cggggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctgga
gcccctggtgaagatggtcgccctggacctccaggtcctcaggggactcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgag
aaaggactgcctggtgctcctggtctgagaggtctccctggcaaagatggtgagacagga
gctgcaggcccccctggacctgctggacctgccggtgaacgaggcgagcagggtgctccg
gggccatctgggttccagggacttcctggcccgcccggtcccccaggtgaaggtggaaaa
ccaggtgaccagggcgttcctggtgaagctggagctcccggcctcgtgggtcccaggggt
gaacgaggtttcccaggggaacgtggctctcccgggtcccagggcctccaggggccccgc
ggcctccctggcactcctggcactgatggtcccaaaggcgcagctggcccaggtggcccc
cctggggctcagggccctccaggtctgcagggaatgcccggtgagagaggagcagctggc
atcgctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagccccc
gggaaggacggtggacgaggtctgactggccccattggcccccctggcccggctggtgcc
aacggtgagaagggagaagttggacctcctggtcctgcaggaactgctggtgctcgcggc
gccccgggtgaacgtggagagactggaccccccgggcccgctggatttgccggtccccct
ggtgctgacggccagcccggtgccaaaggcgagcaaggagaggctggccagaaaggtgac
gctggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggt
gtgactggtcctaaaggagcccgaggtgctcaaggccccccgggggccaccggattcccc
ggagctgcaggccgcgtcggacccccaggttccaatggcaaccctggaccccccggcccc
cctggtccttctggaaaagatggtcccaaaggtgctcgaggagacagtggcccccctggc
cgagctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcct
ggagatgacggtccttctggtcccgacggtcctccaggtccccagggtctggctggtcag
aggggcatcgttggtctgcctgggcagcgtggtgagcgaggattccccggcctgcccggc
ccgtcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccct
ggccccgtgggtcctcctggcctgactggtcctgcgggtgaacctggacgcgagggaagc
cctggtgctgacggcccccctggcagagacggtgcagctggagtcaagggtgatcgtggt
gagaccggtcccttgggtgcccccggagccccagggccccctggctctcctggccccgcc
ggcccagtcggcaagcagggagaccgaggagaagctggtgcacaaggccccatgggaccc
tcaggaccagctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaagga
gagacgggagaggctggcgagaggggactgaagggacaccgtggcttcactggtctgcag
ggtctgcccggcccccctggtccttctggagaccaagggacttctggtcctgccggtcct
tctggccccagaggtcctcctggccccgtcggtccctctggcaaagatggcgctaatgga
atccccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgct
ggtcctcctggaaatcctggaccccctggccctccaggtccccctggccctggcattgac
atgtccgcctttgctggcctaggcccgagagagaagggccccgaccccctgcagtacatg
cgggccgatgaggcagccggcaacctgagacagcacgacgccgaggtggatgccacactc
aagtccctcaataaccagatcgagagcatccgcagccccgagggatcccgcaagaacccc
gctcgcacctgccgggacctgaaactctgccaccctgagtggaagagcggagattactgg
atcgacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacact
ggcgagacctgcgtctaccccagcccagccagcgttcccaagaagaactggtggaacagc
aagagcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttc
agctatggagatgacaacctagctcccaacactgccaacgtccagatgaccttcctgcgc
ctgctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcatcgcctac
ctggacgaagccgctggcaacctcaagaaggccctgctcatccagggctccaacgacgtg
gagatccgggctgagggcaacagcaggttcacgtatactgttctgaaggatggctgcacg
aaacacaccggtaagtggggcaagactatgattgagtaccggtcgcagaagacctcacgc
ctccccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtg
gacatagggcctgtctgcttcttgtaa
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