Hyperoodon ampullatus (northern bottlenose whale): 307062001
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Entry
307062001 CDS
T11951
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 isoform 1
KO
K13174
THO complex subunit 5
Organism
hamp Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03013
Nucleocytoplasmic transport
hamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307062001 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
307062001 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamp03019
]
307062001 (THOC5)
03041 Spliceosome [BR:
hamp03041
]
307062001 (THOC5)
Messenger RNA biogenesis [BR:
hamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
307062001 (THOC5)
Spliceosome [BR:
hamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
307062001 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
307062001
NCBI-ProteinID:
XP_079573545
LinkDB
All DBs
Position
13:complement(23434962..>23464797)
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AA seq
694 aa
AA seq
DB search
MSSESSKKRKPKVIRSDGAPSEGKRNRSETEQEGKYYSEEAEVDLRDPGRDYELYKYTCQ
ELQRLMAEIQDLKSRGGKDVAVEIENRKIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKVEVTM
GDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACAHMKSSQPPRQDKTLSVA
IEGSVDEAKALFKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLSVM
LDLKCKDDSVLHLTFYYLMNLNIMTVKAKVTTAAELITPISAGDLLSPDSVLSCLYPGDH
GKKTPNPANQYQFDKVGILTLRDYVLDLGHPYLWVQKLGGLHFPKEQPQPTVIADHSLSA
SHMETTMKLLKTRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAKVVSRLVKWVTIAHED
YTELHFTKDIMEAGLAGDTNLYYMALVERGTAKLQAAVVLNPGYPSIPPIFQLCLNWKGE
KTNNNDDNIRAMESEVNVCYKELCGPRPGHQLLTNQLQRLCVLLDVYLETESHDDSVEGP
KEFPQEKMCLRLFRGPSRMKPFKYNHPQGFFSHR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcggaatcgagcaaaaaacgaaagcccaaagtgatccgaagtgacggagctcca
tctgaagggaagcgtaatcgttcggaaactgaacaggaaggtaaatactacagcgaggag
gctgaggtggacctgcgggaccctggcagagactatgagctgtacaagtacacgtgccag
gagttgcagaggctcatggccgagatccaggacctgaagagcaggggaggcaaggatgtg
gcagttgagatcgaaaatcggaagatccagagctgtgtgcatttcatgactctaaaaaag
cttaaccgattagcccacatcaggttgaagaaaggaagagatcagacccatgaggccaag
cagaaagtggacgcctatcacctgcagctccagaacctgttgtatgaggtgatgcacctg
cagaaggagatcaccaaatgtctggagtttaaatcaaagcacgaagaaatcgatctggtc
agcttagaggagttttataaggaggctcctccagatatcagcaaggtggaagtcaccatg
ggagaccctcaccagcaaacccttgcacgtttggactgggagctggagcagcggaaaagg
ctggcggagaagtaccgagagtgcctgtccaacaaggagaagatccttaaggagattgaa
gtaaagaaggagtacctgagtagcctccagcctcgtctcaacagcatcatgcaggcttca
ctaccagtgcaggagtatctgtttatgcccttcgaccaagctcacaagcagtatgagaca
gcccgacacctaccacctcccctctatgtcctctttgtccaggccactgcgtatgggcaa
gcctgtgctcatatgaaatcctcccagccccctagacaggataagacgttgtctgtggcg
attgaaggcagtgtggatgaggccaaggctctgttcaagcctcccgaggactcccaagat
gacgagagtgactcggatgctgaggaggagcagaccacgaaacgccggcgacccacactg
ggagttcagctggacgacaagcgcaaggagatgctgaagaggcacccgctgtccgtcatg
ctggacctgaagtgcaaagatgacagtgtactgcacctgactttctactacctcatgaac
ctcaacatcatgacggtaaaagccaaagtgacaaccgccgcagaactgatcacccccatc
agtgcaggtgacttgctgtctcctgactcagtcctgagctgtttgtatcctggggatcat
ggaaagaaaactccaaatccagccaatcagtatcagtttgataaagttggcatcctgact
ttgagggactacgtacttgacttagggcatccctatttgtgggtgcagaagctgggtggc
ctccacttccccaaagagcagccccagcccactgtgatcgctgaccactcgctgagcgcc
agccacatggagaccaccatgaaactgctgaagaccagggtgcagtcccgcctggccctc
cacaagcagtttgcctccctggaacacggcattgtgccagttaccagtgactgccagtat
ctcttccctgcaaaggttgtctctcgcctggtgaagtgggtgacgattgcccatgaggat
tatacggagctgcattttaccaaagacatcatggaggcgggactggctggggacaccaat
ctctactatatggcactcgtggaaaggggcacagctaagctccaggctgccgtggtgctg
aaccccggctacccctccatcccacccattttccagctctgtctgaactggaaaggggag
aaaaccaacaacaacgatgacaatattcgggccatggagagtgaggtcaatgtgtgctac
aaggagctgtgcggcccccggcccggccaccagctcttgacgaaccagctgcagcgcctg
tgcgtgctgctggacgtctacctggagacggagagccacgacgacagcgtggaggggccc
aaggaatttccccaggagaaaatgtgtctgcggcttttcaggggccccagcaggatgaag
ccgtttaaatataaccatcctcaaggattcttcagccatcgctga
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