KEGG   Hyperoodon ampullatus (northern bottlenose whale): 307065069
Entry
307065069         CDS       T11951                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
hamp  Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04151  PI3K-Akt signaling pathway
hamp04382  Cornified envelope formation
hamp04510  Focal adhesion
hamp04512  ECM-receptor interaction
hamp04518  Integrin signaling
hamp04820  Cytoskeleton in muscle cells
hamp04926  Relaxin signaling pathway
hamp04933  AGE-RAGE signaling pathway in diabetic complications
hamp04974  Protein digestion and absorption
hamp05146  Amoebiasis
hamp05165  Human papillomavirus infection
hamp05200  Pathways in cancer
hamp05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:hamp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    307065069 (COL4A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    307065069 (COL4A1)
   04518 Integrin signaling
    307065069 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    307065069 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    307065069 (COL4A1)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    307065069 (COL4A1)
  09154 Digestive system
   04974 Protein digestion and absorption
    307065069 (COL4A1)
  09158 Development and regeneration
   04382 Cornified envelope formation
    307065069 (COL4A1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    307065069 (COL4A1)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    307065069 (COL4A1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    307065069 (COL4A1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    307065069 (COL4A1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    307065069 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hamp04147]
    307065069 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:hamp00536]
    307065069 (COL4A1)
Exosome [BR:hamp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   307065069 (COL4A1)
Glycosaminoglycan binding proteins [BR:hamp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   307065069 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 307065069
NCBI-ProteinID: XP_079577970
LinkDB
Position
16:<3244718..3388948
AA seq 1668 aa
MGPRLGVWLLLPAALLLHEESSRAAAKGVCAGSGCGKCDCHGVKGQKGERGLPGLQGVIG
FPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPG
IPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGFPGPP
GAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPG
VPGQAQVREKGEYAAKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGEKGEKGSL
GFPGDSGYPGLPGREGLKGDKGEAGPPGPPGIVIGTGPLGEKGERGYPGAPGLKGEPGLK
GFPGIQGPPGPPGFPIPGLTGAPGFPGERGEKGDQGLPGVSLPGPGGRDGLPGPPGPPGP
PGQPGHTNGIVECQPGPPGDQGPPGSAGQPGLTGEVGEKGQKGDSCLICDSTGLRGPPGP
QGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGVPGLMGQPGAKGEPGEIYFETRLKG
DKGAPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDVG
PPGPPGFGPIGPIGDKGQMGFPGNPGSPGLPGPKGEEGKVMPLPGPPGAAGLPGSPGFQG
PQGDRGFPGTPGRPGLSGEKGSIGQPGIGFPGPPGPKGVDGLPGDTGPPGNPGRQGFNGL
PGNPGPPGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGNIGGPGIPGEHGAIGPAGLQGIR
GDPGPPGLQGPKGASGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP
KGDKGPQGLPGLTGQSGLPGLPGQQGTPGQPGFPGPKGEMGVMGTPGQPGSPGPAGVPGL
PGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGP
TGDKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGI
PGEKGVPGLPGLQGIPGSPGEKGTKGEKGQAGLPGIGIPGRPGEKGDQGVAGFPGSPGEK
GEKGSSGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKP
GPTGPAGQKGEPGSDGFPGSAGEKGEPGLPGRGFPGFPGAKGEKGSKGDVGFPGLAGSPG
IPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGRKGDRGPQGQPGLPGLPGPMGPPGLPGL
DGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGATGAKGDMGPPGVPGFQGQKGL
PGLQGVKGDQGDQGFPGTKGLPGPPGPPGPYDIIKGEPGLPGPEGPAGLKGLQGPPGPKG
QQGVTGSVGLPGPPGIPGFDGAPGQKGEAGPFGPPGPRGFPGPPGPDGLPGSMGPPGTPS
VDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGEGIRPFISRCAVCEAPAMVMAVH
SQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERSQMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq 5007 nt   +upstreamnt  +downstreamnt
atggggccccggctcggcgtctggctgctgctgcccgccgccctcctgcttcacgaggag
agcagccgggccgccgcgaagggtgtgtgtgctggctctggctgcgggaaatgcgactgc
catggcgtaaagggacaaaagggagaaagaggtctcccagggttacaaggtgtcatcggg
ttcccgggaatgcaaggaccggaggggccgcagggaccaccaggacagaagggtgacacc
ggagaaccaggactgccaggaactaaagggacaagaggacccccaggagcatctggttac
cctggaaacccaggacttcctggtattcctggccaagatggtcctccgggtcccccaggt
atcccaggatgcaacgggacgaagggtgagagagggcctctggggcctccgggtttgcct
ggattcgctggaaatcccggaccaccagggttaccgggaatgaagggggatccaggtgaa
atacttggccatataccagggaccctgttgaaaggtgaaagaggatttcctggaccccca
ggagcacctggttcgccaggactgccagggctgcaaggtcctgttggacccccgggattc
actggaccaccaggtcccccaggccctcctggccctccaggtgaaaaggggcaaatgggc
ttgagttttcaggggccaaaaggtgacaagggtgatcaaggggtcagtgggcccccagga
gtcccaggacaagctcaagttcgagagaaaggagagtacgctgccaaaggagagaagggc
caaaaaggtgaacctggatttcaggggatgccaggggttggagagaaaggtgaacccgga
aaaccaggaccccgaggaaaaccaggaaaagatggtgaaaaaggagaaaaagggagtcta
gggtttccgggggattcggggtacccaggactcccaggccgagagggtttaaagggagac
aaaggtgaagcaggccctcctggcccacctggaattgttatcggcacagggcccttggga
gagaaaggagagcgggggtacccaggggctccagggttgaaaggggagccgggcctcaaa
ggtttcccaggaatacaaggcccgccaggcccgccaggcttcccgataccagggctgact
ggtgcccccggcttccccggtgaaagaggagagaaaggtgaccagggcttgccaggcgtg
tccttgcccggaccaggtggaagggatgggctaccgggcccccctgggccccccggcccc
cctgggcagccaggccacacaaatggaattgtggaatgccagcctgggccgccaggtgac
cagggtcctcctggaagtgcggggcagccagggttgacaggcgaagttggagaaaaaggt
caaaaaggagatagttgtctcatctgtgactcaacaggacttcgtgggcccccagggcca
cagggaccccccggagaaataggtttcccaggacagccaggggccaagggcgacagaggc
ttacccggcagggatggtcttgaaggattgcctggaccgcaaggtgtgccagggctgatg
ggccagccaggagccaagggcgagcctggcgagatttacttcgaaactcgactcaagggc
gacaaaggagccccaggtttccccggccagcccgggatgccaggcagagcaggctctccc
ggaagagacggccatccgggtctgcccggccccaaaggctccccgggttcagtaggatta
aaaggagaacgtggccccccgggaggagttggattccccggcagccgtggtgacgtcggc
cctcctgggcctccaggctttggccctattggccccattggtgacaaaggacagatgggc
tttccgggaaaccccgggtccccaggcctgccaggtcccaagggtgaagaaggaaaagtc
atgcccttacccggtccccctggagcagcaggacttccgggatcccccggtttccaaggg
ccccaaggtgaccgaggttttcctggaaccccgggaaggccgggtctctctggagagaag
ggttcaatcggccagcctgggattggctttccagggcctcccggccccaaaggtgttgac
ggtttacctggagacactggacctcctggaaatcctggtcgccaaggttttaatggctta
cctggcaatccaggtccacctggccaaaagggcgagcctggagttggtctgccgggactc
aaaggtctgccaggactccctggcatccccggcacccctggagagaagggaaacatcggg
ggaccaggcattcccggagagcacggcgccatcggccctgcaggccttcagggaatcaga
ggtgacccgggacctcctggattgcaaggtcccaaaggagcttctggagtccccggaata
ggccctcctggagctatgggaccccctggaggacagggacccccagggtcatcaggccct
cctggagtgaaaggagagaagggcttccccggattcccaggcctggacatgccgggcccc
aaaggagacaaagggcctcaggggctccccggcctgacgggacagtcagggctgcctggt
ctccctggacagcagggcacacctggacagcccgggttcccaggtcccaagggagagatg
ggcgtcatggggacccccgggcagcccggctcgccaggaccagcgggtgtgccaggattg
ccgggtgaaaaaggggaccacggcttcccgggcagctcgggacccaggggagaccctggc
ttcaagggtgataaaggagatgtgggtcttcctggcaagccgggctccatggataaagtg
gatatgggcagcatgaagggccagaaaggagaccaaggagaaaaaggacaaatcggccca
actggtgataaaggatcccggggagatcctggaaccccaggagtgcctggaaaggacggt
caggcaggacaacctggacagccaggacctaaaggtgatccgggcataagtgggacccca
ggtgctccgggacttcctggacccaaaggatcggttggtggaatgggcctgccaggaata
cctggagaaaaaggtgtgcctggcctccctggcctgcagggcatccctggctcacctgga
gaaaagggaacaaaaggagagaaagggcaggcgggtctgcctggcattgggattccagga
cggcccggggaaaagggagaccaaggggtagcaggttttccaggaagccctggagagaag
ggagagaaaggaagcagtgggatcccggggatgcccgggtctccgggccccaaaggctca
ccagggagtgttggctatccaggaagccctgggttgcctggagaaaaaggtgacaaaggc
ctcccgggattggatggcatccctggcatcaaaggagaagcaggtcttcctgggaagcct
ggtcccacgggcccggccggccagaaaggggagcccggcagtgatggattcccagggtcg
gcaggagagaagggtgaaccaggtctacccggaagaggattcccagggtttccaggggcc
aaaggagagaaaggttcaaagggcgacgtgggttttccaggcttagctgggagcccagga
attcctggatccaaaggagaacaaggattcatgggtcctccggggccacagggacagccg
ggattgccaggcactccgggccacgcggtggaggggcgcaaaggagaccggggcccacag
ggacaacctggcctgccagggcttccgggacccatggggcctccagggctccctgggctt
gatgggctgaagggtgacaagggaaacccaggctggccgggcactcctggggctccaggg
cccaagggagacccaggattccagggcatgccggggatcggtggctctccgggagctaca
ggtgctaagggtgacatgggacctccaggagttccagggtttcaagggcagaaaggtctc
cctggccttcagggagttaaaggtgaccaaggagaccaaggtttccctggaactaaaggt
cttcctggccccccgggccccccgggtccatacgacatcatcaaaggggagccagggctt
cctggtcctgagggccccgcaggtctgaaagggcttcagggacctccaggccccaaagga
caacaaggtgtgacaggatctgtgggcttacctgggccaccgggtattcccgggtttgat
ggggcccctggccagaaaggagaggcaggaccctttggacctcctggtccaagaggcttc
ccgggtccacccggccctgatgggttgccgggatccatgggtcccccaggcaccccctct
gttgatcacggcttcctcgtgaccaggcacagtcagacaacagacgacccccagtgtcct
cctgggaccaaaatcctctaccacgggtactctctgctctacgtacaaggcaacgagcgg
gcgcacggccaggacctgggcacggcaggcagctgtctgcgtaagttcagcacgatgcct
ttcctcttctgtaacatcaacaacgtctgcaacttcgcctcccgaaatgattactcatac
tggctgtccaccccggagcctatgcccatgtccatggcgcccatcaccggggagggcatc
aggcccttcatcagcaggtgtgctgtgtgtgaggctccggccatggtcatggctgtgcac
agccaaaccatccagatcccgcagtgccccagcggctggtcctcgctctggattggctac
tcctttgtgatgcacaccagcgccggagccgaaggttctggccaagccctggcctctcct
gggtcctgtctggaagagttcagaagcgcccccttcatcgagtgccacggccgcgggact
tgcaattactatgcaaacgcttacagcttttggcttgccacgatcgaaagaagccagatg
ttcaagaagcccacgccgtccaccttgaaggctggagagctgcgcacgcatgtcagtcgc
tgtcaagtgtgcatgcggagaacataa

DBGET integrated database retrieval system