Hyperoodon ampullatus (northern bottlenose whale): 307070250
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Entry
307070250 CDS
T11951
Symbol
SDC3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
hamp
Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp04514
Cell adhesion molecule (CAM) interaction
hamp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hamp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
307070250 (SDC3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
307070250 (SDC3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hamp00535
]
307070250 (SDC3)
Proteoglycans [BR:
hamp00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
307070250 (SDC3)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
SDH8
Motif
Other DBs
NCBI-GeneID:
307070250
NCBI-ProteinID:
XP_079584638
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All DBs
Position
2:complement(<25409001..>25442970)
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AA seq
441 aa
AA seq
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MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPVVLPTMDIQ
PVGTPFEELPSERPTPGPATSPPLVTEVPEEPSQRATTISTPATTAATTTGTPAVATVPA
TVATAAPSIPAAPPSTATTSIVRTTGIRRLLPLPLTTAATARATTPEVPSPPTTVAVLDT
ETPTPRLVNTATSRPRTLPRPATTQEPDIPEKSTLPLGTTAPGPTEVAQTPTPEFFLTTI
RDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSPPPGTLPKGARPGPGLL
DNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTL
EEPKQASVTYQKPDKQEEFYA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccgggccgccgcaccgcgccggggccgcccacggggctggcgctggggccgga
gccgcggccgggccaggggcccgcgggctgctcctgccgccactgctgctgctgctgctg
gcggggcgcgccgcgggggctcagcgctggcgcagtgagaacttcgagaggcctgtggac
ctcgagggctctggggacgatgactccttccccgatgatgagctggatgacctctactcc
gggtcgggctcgggctacttcgagcaggagtcgggtattgagacagccatgcggttcagc
ccagatgtggccctggcagtgtccaccacacccgtggtgctgcccaccatggacatccag
cctgtgggcaccccgtttgaagagctcccctctgagcgccccaccccggggccagccacc
agccccccattggtaacagaggtcccagaagagcccagccagagagccaccaccatctcc
actccggcaaccactgctgccacaaccacagggaccccagctgtggccacagtgcccgcc
acagtggccaccgccgcccccagcatccctgcagcacccccttccacggccaccacctcc
atcgtaaggaccaccggcatacggaggcttctgcctctgccactgaccacggcagccaca
gcccgggccaccaccccagaggtaccctcacctcccaccacagtggctgtcttggacaca
gagaccccaacacccaggctggtcaacacagctacctccagaccaaggacccttcccagg
ccagctaccacccaggagcctgacatccctgagaagagcaccctgcccctggggaccact
gcccctggacccacggaggtggctcagaccccaactccagagttcttcctgaccacgatc
cgggatgagccagaggtgccagttagcgggggacccagtggggactttgagttgccggag
gaagagaccacacagccagacacagccaatgaggtggtggctgtgggtggggccgcggcc
aagccgtcacctccacctgggacgctgcccaagggtgcccgcccaggccctggcctcctg
gacaatgccatcgactcaggcagctcggcggctcagctgccccagaagagcatcctggag
cggaaggaagtgctcgtagctgtgattgtgggcggggtggtgggcgccctctttgccgcc
ttcctggtcacactgctcatctaccgcatgaagaagaaggacgagggcagctacacgctg
gaggagcccaaacaggcgagcgtcacataccagaagcccgacaagcaagaggagttctac
gcctag
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