Hetaerina americana (American ruby spot damselfly): 139692382
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Entry
139692382 CDS
T10852
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hamr Hetaerina americana (American ruby spot damselfly)
Brite
KEGG Orthology (KO) [BR:
hamr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hamr03016
]
139692382 (RtcB)
Enzymes [BR:
hamr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139692382 (RtcB)
Transfer RNA biogenesis [BR:
hamr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139692382 (RtcB)
Prokaryotic type
tRNA splicing ligases
139692382 (RtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
Motif
Other DBs
NCBI-GeneID:
139692382
NCBI-ProteinID:
XP_071446644
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKMNSHCWKIHKGFQPNMNVEGVFYVNDHLEKLMFDELRNACRPGMV
GGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSDPNSVVSPGGVGFD
INCGVRLLRTNLFEKDVLPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAGKMGIESRGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHLTPDDLDMHVIYDVSHNIAKIE
EHIVDGKQKTLLVHRKGSTRAFPAHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM
QETFGSTCHGAGRALSRAKSRRNLDYQEVLNRLEQMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcaggcagtacaatgaagaactgaagtatctagaaaaaatgaattcacattgc
tggaagatacataagggctttcaacctaatatgaatgttgaaggagtattttatgttaac
gatcatttggaaaaattaatgtttgacgaattacggaatgcttgccgtccagggatggtt
ggaggattccttcctggtatgaagcaaatagctaatgtcgctgccctgccaggaattgtt
ggaaaatctgtcggtctcccagacgtccattctgggtatgggtttgcaattggaaacatg
gcagcatttgatatgagtgatcctaactcggttgtttctcctggcggagtaggatttgac
ataaactgcggtgtgagactattgagaactaatctatttgaaaaggatgtcttacctgtt
aaggaacaactggcgcaaagtctgtttgaccacattccagttggagttggctcaaaaggt
ataattcccatgaacgctcgtgatttggaggaggctcttgagatggggatggattggtcc
ctgagagaaggttatatttgggccgaagataaggaacactgtgaggaatatggcagaatg
ttgaatgcagatccttccaaagtcagcatgagggcaaagaagaggggtcttccacagttg
gggacattaggagctgggaatcattatgcagagatacaggtcgtggatgagatttatgac
aaatgggctgctggaaaaatgggtattgaaagtcgagggcagatttgtgtgatgattcac
tctggtagcagaggatttggacatcaagttgcaactgatgcattggtgcaaatggagaag
gccatgaaaagagacaacattgagacaaatgacaggcagctagcatgtgccagaatcaat
tcggttgaaggacaggactacctgaagtcaatggcagcagcggccaactttgcctgggtt
aatcggagctcaatgacattccttagtaggcaggcatttgcaaagcagttccatttaaca
ccagatgacctagacatgcatgttatttatgatgtgtctcataacattgccaaaattgaa
gaacacatcgttgatgggaaacagaaaacattgctagttcataggaagggttcaactcga
gcctttcccgctcatcatccattgattcctgtggactaccaattgactggtcaacctgtt
ttgattggtgggacgatgggtacatgcagttatgtccttactggaacagaaaagggaatg
caggaaacgtttggctcaacctgtcatggagctgggcgagcactgtctcgtgcaaagtct
aggagaaatttggattaccaggaggtgctgaataggctagagcaaatgggcatttcaata
agagtggcatctcctaaactggtgatggaagaagctccagaatcatataagaatgtgaca
gatgtagttgacacctgccatgctgcaggaatcagtaaaaaatgtattaaactcaggcca
attgctgtcatcaagggttaa
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