Hetaerina americana (American ruby spot damselfly): 139700269
Help
Entry
139700269 CDS
T10852
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hamr Hetaerina americana (American ruby spot damselfly)
Pathway
hamr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139700269 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamr03019
]
139700269 (Mtr4)
03041 Spliceosome [BR:
hamr03041
]
139700269 (Mtr4)
03009 Ribosome biogenesis [BR:
hamr03009
]
139700269 (Mtr4)
03016 Transfer RNA biogenesis [BR:
hamr03016
]
139700269 (Mtr4)
Enzymes [BR:
hamr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139700269 (Mtr4)
Messenger RNA biogenesis [BR:
hamr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139700269 (Mtr4)
Spliceosome [BR:
hamr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139700269 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
139700269 (Mtr4)
Ribosome biogenesis [BR:
hamr03009
]
Eukaryotic type
Pre-60S particles
Helicases
139700269 (Mtr4)
Transfer RNA biogenesis [BR:
hamr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139700269 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
Death_3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
139700269
NCBI-ProteinID:
XP_071455006
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADFVDELFSVFTEQSTPLKAFKSEGDDAGSSLSSDVPSVAVGIKRDLEDDEELSGKKLK
TESALDDVIIDESQPRIRVHTVETLEACTHEVAVPPDMDYQPLRAPPPGSKPAKQYPFLL
DPFQKEAILCIENSQSVLVSAHTSAGKTVVAEYAIAVSLHDKQRVIYTTPIKALSNQKYR
EFYEDFKDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDK
ERGYVWEETLILLPDNVRYVFLSATIPNATQFAEWVTHLHKQPCHVVYTEYRPVPLQHYI
FPAGGEGIHLVVDENGQFKEDNFNTAMAVLQNSGDASKGDTAILGKGRGGGNKSGNETNC
FKIVKMIMERNFAPVIVFSFSKKECEAYAVQMASLDFNNAEEKCLVDEVFNNAMDVLSEE
DRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPAR
TVLFTGARKFDGKDFRWLTSGEYIQMSGRAGRRGLDEKGIVILMVDEQMGSSVGKEIVRG
LPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNYAAIPNLYDKVKSIQNDHDS
IEIPREDEVASYYRIRTQLDNLSSQFQKYITQPQHIVPFLQPGRMVKIKNENDDFDWGIV
INFKKKVEKGKGRGPGSSTCTYVVDVLLHVAKGTGPTASASGGVSLQPKPAPKDETGEME
VVPVLLELVSQISSVRLYFPNDLRPADNRMSVLKTIKQVRKRFPKGVPLLDPEKDMRITN
DDFLSIVKRIRAFEERLYSHPLHGDPKLGVLYDLYSRKMKVGNELKGTKMELKKAKSLLQ
MDELKHRKRVLRRLGYCTASDVIEMKGRVACELSSADELLMTEMMFKGIFTDLTAAQSVA
LLSCFVCEEKSNDAPKISNELSGALRQMQDLARKIAQISKEAKLEINEDNYVDKFRPFLM
DIVFAWCQGASFAQLCKMTEVFEGNIIRCMRRLEEVLRQLCQAAKNIGNTELENKFSEGI
KLMKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgttgatgaactcttcagtgtatttacggagcaaagtactccgttaaaa
gcttttaaaagtgaaggcgacgatgctggatcgtctctttcaagtgatgtgccatccgtg
gctgtcggcatcaagagagatcttgaggatgacgaagagctgtccggcaaaaagctaaaa
actgaatcagcattggacgatgtaattattgatgaatctcaacctcgtatcagagtccat
accgtggagactttagaagcatgtacacatgaagttgctgtgcctccggatatggattat
cagccattaagagcacctccccccggatccaagcctgctaagcagtatccgtttctttta
gatccgtttcaaaaggaggctattttgtgtattgaaaattcccagtctgtactggtatcc
gctcatacttctgctggaaaaacagttgtggctgagtatgcaattgcagtgtcccttcat
gacaaacagagggtaatttatacaactccaattaaagctctgagtaatcagaaatatcgt
gaattctatgaggattttaaagatgttggtcttataactggagatgtcacaattaatccc
tctgcaagttgtctcattatgacaactgagattttgagaaacatgctgtacagaggttca
gaagtgatgcgggaagtcggatgggtaatctttgatgagattcattacatgcgagacaaa
gaaagaggctacgtttgggaggaaacattgattctattgcctgacaatgtccgctatgtt
ttcctctcggccacaatacctaatgctacccagtttgctgagtgggttactcacctccac
aagcagccgtgccatgtggtatacacagagtacagaccagtaccgcttcagcactacata
tttcctgccggaggagaaggtatccatttagtagttgatgaaaatggtcagttcaaggaa
gataatttcaatacagcaatggcggtcttgcagaattcaggagatgcttccaagggtgac
acagcgatattaggaaagggccgtggaggtggcaacaagtcaggaaatgaaactaattgc
tttaaaatcgtgaagatgataatggaaaggaatttcgctccagtgatcgtcttcagcttc
agcaaaaaggaatgtgaagcatatgctgtgcaaatggcatctttggatttcaacaatgct
gaagaaaagtgtttggtagatgaggttttcaataatgcaatggatgttctatctgaagaa
gatcgtcaacttcctcaagttgagaatgttttgccattgttgagaagagggattggcatc
catcatggaggattgctgccaatcctcaaagagactatagagatcttattctcggaagga
ctgatcaaagccttatttgccacagaaacatttgcaatgggactcaacatgcctgcaagg
actgtacttttcacgggtgctcgtaaatttgatggcaaggacttcagatggttaacgtca
ggagagtacatacagatgtctggccgagccggaagaagaggcctggatgagaaaggaatt
gtcatattaatggttgatgagcaaatgggatctagtgttggaaaagaaatagttcgtgga
ctccccgatccgatcaattctgccttccatctaacttacaatatggtccttaatctactt
cgagtggaagagatcaatcctgaatatatgttggagaggtcatttttccagtttcagaac
tatgcagctatacccaatctgtatgacaaagtcaaatccatacaaaatgatcatgattcg
attgaaataccaagagaagacgaagtggcctcatattacagaattcgtactcagctggac
aatttgagttctcagtttcaaaaatacatcactcagcctcagcatatagttccattctta
caacctggcaggatggtaaagataaaaaatgaaaatgatgactttgattggggtattgtg
ataaacttcaagaagaaagttgagaaagggaaaggcagagggcctgggagctcaacttgt
acttacgtggtggatgtgctgcttcatgttgccaaaggaactggaccgacggcatctgcg
agtggcggagtaagtttacaacctaaacctgctccgaaagatgaaactggggagatggaa
gtggtgcctgtgttactcgagctggtcagccaaataagctctgttcggctttattttccc
aatgaccttcgacctgctgacaatcgaatgtctgttctcaaaaccattaagcaagtgcgt
aagcgatttcctaaaggggtcccgctgcttgatccagagaaggacatgaggataactaat
gatgacttcttgtccatcgtcaaaaggattcgtgcttttgaggagaggctgtattctcat
cctttgcatggtgaccccaagctgggtgttctgtatgacctctactccagaaagatgaag
gttgggaatgaactgaaaggaacaaaaatggaattaaaaaaagcaaaatccctccttcaa
atggatgagctcaagcacaggaagcgtgtgctgaggcgtcttggctattgcactgcttca
gatgttatagaaatgaaaggaagggtggcttgtgagcttagcagtgccgatgaactgttg
atgacagagatgatgttcaaggggatatttacagatttaacagctgcacaaagtgtggca
ttattaagctgttttgtttgtgaagaaaaaagcaacgacgctcccaaaatatccaatgaa
ctttccggtgctttgcgtcaaatgcaggatttagcacgaaagatagcacagatcagcaaa
gaagcaaagctggaaataaatgaagacaactatgttgataaatttagaccttttctcatg
gatatagtctttgcatggtgtcaaggtgcctcttttgcccagctctgtaaaatgactgaa
gtttttgaaggtaacataatcaggtgtatgagaaggttagaagaagtactacggcaactt
tgccaggctgcaaagaacattggcaacaccgaattggagaacaaattcagtgaagggatt
aagctcatgaagagagacattgtatttgcagccagtctttacttataa
DBGET
integrated database retrieval system
