Halomonas sp. MS1: NF683_00465
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Entry
NF683_00465 CDS
T09972
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NF683_00465 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_00465 (recB)
Enzymes [BR:
hams01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NF683_00465 (recB)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF683_00465 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UTD55723
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All DBs
Position
103233..106946
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AA seq
1237 aa
AA seq
DB search
MSQPAPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSEDHSAFVRPLTPPE
ILVVTFTNAATQELRERIRHRLVEAAGVFRKAPTSEPSDDPLLLQLREQYAEATWPACAR
RLELAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQRELEQEVVRDYWRTFY
YPLYADALGSITRYWKSPDKLHDDVRKLLNESDALGSQRPAPADTLSAAEAERSATLGTL
KAPWPAWLDELVPALEEAAKRKAFKGQSFNAKSRASWLGTLREWCESDLERPALTPAAWK
RLTPDGMAEIWKDGAPPCPAAWEALADMPAALNALPEPRNDLLIHAVQWCKVRMEREQER
RAEMGPNDLLTHLDRALQGPNKDALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYDVAN
PRRDAAMLLIGDPKQAIYAFRGADIFTYLQARQDTAGRHVTLGTNFRSSRAMVEAVNHCF
HYADQHPAGAFLFREEGGENPLPFLSVDAKGRDEQLVHQGQPLPAMTLWPLTSEEPLSKT
AYQTEMAERCASYMVELLAAAQSGNKQGQSGFQKGDGLSPLKPSDMAVLVNGLQEARAIR
LALASRGVKSVYLSDHDKVFSSPMAKQVERWLRACAEPLASSRQAEAHLRAALATPVLGL
SLADLDHLQQNELGWEARVEQFSHYHRLWQRQGVLPLVRRMMVDFDIPARLLGEFEEGER
LLTDLLHLGELLQQASAELDGEHALIRFLYEAIADPESHGDSHKLRLESDADLVKVVTIH
KSKGLEYPLVFLPFIANHRPVSDKDIPLRWHDAHGNLQLSLSADEETLATADRERLGEDL
RKLYVALTRARHATWLGLASLQGLENSALGYLISGGKMIAPAELTTALEALAQGSEIAVN
EPPAPTAQRLALSEQSATLGHARTPTRPAKEHWWIASYSALRLSGTLSAPTATPLEPTTA
QEATAFEVLDEPQELSQLAQQETFHLHKFPRGPGPGTFLHGLLEWAGRQGFAAAANDQDS
LNDMLWRRVQLRGWQTWQEPLAGWLSALLTTPLPLAAPNQQNVALTELTSYQVELEFWLA
AQRVNTQAIDALVSKHLLPGVERPALDADTLNGMLKGFIDLAFEHQGRFYVLDWKSNYLG
PNDSDYEPEALRHALLAKRYDLQAALYLLAMHRLLKARLPDYDPHQHLGGSMTVFLRGSR
SPGRGVFSEPAPVELIEALDSLFAGAPFSSPAQEATV
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcccgccccgcttaacccacttacgctaccgcttcacggcagccgcctgatt
gaagccagcgcgggcacgggcaaaaccttcaccatcgcactgctctacgtgcgcctggtg
ctgggcgggcagcacagcgaggaccacagcgcctttgtgcgcccgctcaccccgccggaa
atcctggtcgtcaccttcaccaatgctgccacccaggaactgcgcgaacgtatccgccac
cggctggtagaagccgctggcgtttttcgcaaggcccctacttccgagccttcggacgat
ccgttgctcctccaactccgcgagcaatacgcagaggcaacttggcccgcctgcgcccgc
cgtctggagctagccgccgaatggatggacgaagccgcggtttccaccatccacagctgg
tgctaccgcatgctgcgcgaacacgccttcgatagcggtagcctgttctcgctcaacctg
gaaaacgaccagcgcgaactggaacaagaagtggtgcgcgactactggcgcaccttctac
tacccactgtatgccgacgccctgggcagcattacccgctactggaaatcgccggataaa
ctccacgatgatgtacgcaagctgctcaacgaaagcgacgcactgggcagccagcgcccc
gcgccagccgacacattaagcgctgccgaagccgaacgcagcgccacattaggcacgtta
aaagccccctggcccgcttggctagatgaactggtgcccgcactggaagaggccgctaaa
cgtaaagccttcaaaggccaaagcttcaacgccaaaagccgcgccagctggctaggtaca
ctgcgcgaatggtgcgaaagcgaccttgagcgccccgcgcttacccccgccgcctggaaa
cgcctgaccccagacggcatggccgagatatggaaagacggcgcgccaccctgcccagcc
gcctgggaagcgctggcggacatgcccgccgctctcaacgccttacccgaaccgcgcaac
gacctgctgattcacgccgtgcagtggtgcaaagtacgtatggagcgcgagcaagaacgc
cgcgctgaaatgggccccaacgatctgctcacccatttagaccgcgccctgcaaggcccc
aacaaagacgccctggccgcgcagattctgcgccagttccccgtggcactgattgacgag
ttccaggacaccgacccgattcagtaccgcatttttaacgcggtctatgacgtcgccaac
ccccgccgcgacgccgctatgctattgatcggtgaccccaagcaggccatctacgccttt
cgcggtgcggatattttcacctatctgcaagcccgccaagacaccgcaggccgccacgtc
actctgggcaccaacttccgttccagccgcgccatggtggaagccgtcaatcactgcttc
cactacgccgatcagcacccggctggggcgttcctatttcgcgaagaaggcggtgagaac
ccgctgccgttcttatcggtagatgccaaaggccgcgacgaacagctggtccaccaaggc
cagccgctgcccgccatgacgctctggccgttaacaagcgaagaaccactttccaaaacc
gcctaccaaaccgagatggccgaacgttgcgcctcttatatggtggaactgctcgcggca
gctcaaagtggcaataaacaaggccaaagcggcttccaaaaaggcgatggcctaagcccg
ctaaaaccttccgatatggcagtgctggtcaacggcctgcaggaagcccgtgccattcgc
ttagcgctggccagccgtggagtaaagagtgtttacctttccgaccacgacaaggtattt
agctcgcccatggcgaagcaggtagaacgctggctgcgcgcctgcgccgagccgttagcc
agctcccgccaagccgaagcccatctgcgcgccgctttggccacgccagtattggggcta
agcctagccgaccttgatcacctgcaacaaaacgaactgggctgggaagcgcgggtagag
caattcagccactatcatcgcctatggcagcgccagggtgtgctgcccctggtacgccgt
atgatggtggatttcgacattcccgcccgcctgttgggggaattcgaagagggtgagcgc
ttgctcaccgacctgctgcacttgggcgaattgctgcagcaagccagcgctgaactggat
ggcgaacacgcgctgattcgctttctgtatgaagccattgccgacccggaaagccacggc
gacagccacaagttgcgcctggaaagcgacgcggatttggtcaaggtggtcaccatccac
aaatccaaagggcttgagtatccgctggtattcctgccgtttatcgccaaccaccgcccg
gtgagcgataaagacataccgctgcgctggcacgacgcccacggcaaccttcagctcagc
ctaagcgcggatgaagaaaccctggccaccgccgaccgcgaacgtttaggggaagacctg
cgcaaactgtacgtagcgctgacccgcgcccgccacgcgacttggctggggctagcctcg
ctgcaagggttggaaaatagcgccctcggctacctgattagcggcggaaaaatgattgca
ccggcagagctaaccaccgcgctggaagcgctggctcaaggcagcgagattgctgtcaac
gagccaccggcacccactgcccagcgccttgccctctctgaacaaagcgccacgcttggg
catgcccgcacgcccacgcgcccggccaaggaacactggtggattgccagctactcggcg
ctacgcctttccggcacgctcagcgcccccacggccacgccactggagcccaccaccgcc
caggaagccaccgcgtttgaagtattggatgagccgcaggaactatcccagttggcccag
caggaaacatttcatctgcataaatttcccagggggccagggccgggcactttcctgcac
gggctgttggaatgggcaggcagacaaggctttgcagccgctgctaacgatcaagattca
ctcaacgacatgctatggcggcgcgtacagctacgcggctggcaaacatggcaggaaccg
ctggctggctggctttcagcgctgctcaccacgccgttaccgctggccgcgccaaaccag
caaaacgtcgcgctcaccgaactcaccagctaccaagtggagctagagttctggctggcc
gcccaacgggtcaacacccaagcgattgatgcgctggtaagcaagcacttactgccaggg
gttgagcgcccagcgctggatgccgataccctaaacggcatgctcaaaggctttatcgat
ttagctttcgagcaccaagggcgcttttacgtgttggactggaaatcgaactatttaggg
ccgaatgacagcgattacgaaccggaagccttgcgccatgcgctgctagccaagcgctat
gatctccaggccgcgctttacctgctggctatgcatcggctgctaaaagcgcgcctgccc
gactacgacccgcaccagcacttgggcggttcaatgacggtatttctgcgcggcagccgc
agcccagggcgcggggtattttccgagcccgccccggttgaactgatcgaagcactggac
agcctgtttgcaggcgcaccgttttcaagtcccgcacaggaagcgacggtatga
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