Halomonas sp. MS1: NF683_00470
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Entry
NF683_00470 CDS
T09972
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NF683_00470 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_00470 (recD)
Enzymes [BR:
hams01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NF683_00470 (recD)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF683_00470 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
UvrD_C_2
Viral_helicase1
SH3_13
AAA_22
Helicase_RecD
UvrD-helicase
nSTAND3
AAA_28
SLFN-g3_helicase
NTPase_1
AAA_16
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UTD55724
LinkDB
All DBs
Position
106943..109321
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AA seq
792 aa
AA seq
DB search
MSKPKDTHTFDLFGDAVETQDAQPSTASTPVSAHPALSDTTELLTLCERWVARGWLRDLD
RALVRFLAAEAADAPALLLLAAALASHQLGRGHVCLDLNATLNAPDFALSLPPEGDDLSD
PPPLPSDVLATLTLSEWQAALHHPLLTSEGPGNTPLVVVTTHSGSDTRLYLRRYWQYEQT
LHQQIASRLEDENTTHTQAVNDNATTATDNRCRRPIYWAMGDDSHPGLLPQALHILFKPS
DGLDWQKTACALAARSRFGIITGGPGTGKTTTVVRLLALLQTLQLAHSPSQPLRIRLAAP
TGKAAARLNESIAGQVSQLPFKGLTTLLEGALSEGALLEGALWEGASAREGEAPEQLKAA
IPTEVTTLHRLLGARPDTRHFRHSVANPLALDVLVIDEASMVDIEMMAAVLSALPANAQC
VLLGDKDQLASVEAGSVLGDLCRRAEAAHYTPATAQWLESATGQPLPPEYLDADGQPLDQ
AITMLRVSHRFNEHSGIGQLAQAINQPSHAQTDWEKQQAVNAVLRHGYPDLHHLTLAEDT
ALDKLVIHGSADKFLNGGEGRTNHKNEPIAPPTGYRHYLKVLNAQRPRGESFEDNPAAYN
AWASDVLSAYSHFQLLCALRKGPWGVEGLNLHIAKTLRSEKLLFGSDYTLEKGWYEGRPV
LVTQNDYGLKLMNGDIGITLAVPDPRNPQQKLLRVAFPSSSATSDADNPIRWVLPSRLHA
VETVFAMTVHKSQGSEFLHTALLLPPTINPILTRELVYTGITRARDWLTLVEAKRGVLNE
AVVREVMRVSGM
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcccaaagacacccacaccttcgacctgtttggcgatgccgttgaaacacag
gatgcccagccctccacggcttccacgccagtgagcgctcaccctgcgttaagcgatacc
acggaattactaactctatgcgagcgctgggtagccaggggctggctgcgtgatttagac
cgcgccctggtgcgctttttagcggcagaagcagcggatgcccccgcgctgctgctgtta
gccgccgccctggccagccaccagctaggccgtggccatgtgtgcttggacttaaacgcc
acgcttaacgcaccggattttgccctttcgctaccgccagaaggggatgatttaagcgac
ccgccaccgctgcccagcgatgtgctggcaacgctcacgctaagcgaatggcaagctgcg
ctgcatcacccactgctcaccagcgaaggccccggcaacacaccgctggtggtagtgacc
actcactcaggttcagacacgcggctctacctacgccgctactggcagtatgagcaaacc
ctacaccagcaaatcgccagccgcttagaagatgaaaacaccacacacacacaggcggtg
aatgataacgccacgacggcaactgataaccgttgtaggagaccaatttattgggcgatg
ggtgacgatagtcaccccggccttctcccccaggcactgcatattctgttcaagccaagc
gacggcctcgactggcaaaaaaccgcctgcgccctggccgcccgcagccgcttcggcatt
attaccggcggccccggcaccggcaaaaccaccaccgtggtgcgcctgctcgccctgctg
caaaccctgcaactggcccactcacccagccaaccgctgcgcattcgcctagccgccccc
accggcaaagccgccgcccgcctgaatgaatccatcgccgggcaagtcagccaactcccc
ttcaaaggattaaccaccttattggaaggagctttgtcggagggagctttgttggaagga
gctttgtgggagggagcttcagctcgcgagggtgaggccccagagcagctaaaagccgcc
attccaactgaagtcaccacacttcaccgcttattaggcgcaagacccgacacccgccac
ttccgccacagcgtcgccaacccgctagcgttggatgtactggtgatcgacgaagcgtcc
atggtagatatcgaaatgatggccgccgtgctaagcgctctgcccgccaatgcccagtgc
gtgctgctgggggataaagaccagttggcatcggtagaagctggctcggtactcggcgat
ttatgccgccgcgccgaagccgcccactacaccccagcaaccgcccaatggctggaaagc
gccaccggccagccgctgccacccgagtacctggatgctgacggccagccgctcgaccaa
gccattaccatgctgcgggtaagccaccgctttaacgaacacagcggcattggccagtta
gcccaggcgattaaccagcccagccatgcccaaactgactgggaaaaacagcaggctgtt
aacgccgtgctacgccatggctacccagaccttcaccacctaacgcttgctgaggacacc
gcgctggataagctggtcattcacggcagcgcggataagtttctcaatggcggtgaaggc
cgcactaaccacaaaaatgaacccatcgccccgcccactggctatcgccactacctaaag
gtgctaaacgcacagcgcccgcgcggggaatcgtttgaggacaacccagcggcctataac
gcctgggcaagcgatgtgttaagtgcctacagccacttccagctgctatgcgcgctgcgc
aaaggcccctggggggtagaaggtttaaacctgcatatcgccaaaaccctacgcagcgaa
aagctgctgtttggcagtgattacacgttggagaaaggctggtatgaaggccgtccggta
ctggtcacccaaaacgactacggtctaaaactgatgaacggtgatatcggcatcaccctg
gcggtgccggatccccgcaatccgcaacaaaagctgttgagagttgcctttccttcatca
agtgccaccagtgatgccgataaccccatccgctgggtgctgccctcccgcctgcacgcg
gtagaaaccgtattcgcgatgacggtacacaaatcccaaggctcggagttcctgcacacc
gccctgctgctaccgcccaccatcaacccgattctgacccgcgaactagtctacaccggc
atcactcgcgcccgcgactggctcacgctagtggaagccaaacgcggagtgctgaatgag
gctgtggtgagggaagtgatgagggttagtgggatgtag
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