Halomonas sp. MS1: NF683_03315
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Entry
NF683_03315 CDS
T09972
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03030
DNA replication
hams03410
Base excision repair
hams03420
Nucleotide excision repair
hams03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF683_03315 (polA)
03410 Base excision repair
NF683_03315 (polA)
03420 Nucleotide excision repair
NF683_03315 (polA)
03440 Homologous recombination
NF683_03315 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hams03032
]
NF683_03315 (polA)
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_03315 (polA)
Enzymes [BR:
hams01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF683_03315 (polA)
DNA replication proteins [BR:
hams03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NF683_03315 (polA)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NF683_03315 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF683_03315 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UTD56262
LinkDB
All DBs
Position
complement(711742..714516)
Genome browser
AA seq
924 aa
AA seq
DB search
MARAPIVLVDGSSYLYRAFHALPPLTTSNGQPTGAVKGVLNMLKRLIKDYPESPMAVVFD
APGKTFRDEMYSDYKAHRPPMPDDLRSQIKPLHACVKALGLPLLCIEGVEADDVIGTLAH
HATQAGRDAVISTGDKDMAQLVNDHITLVNTMKEETLDETGVKEKFGLPPSLIIDFLALM
GDKVDNIPGVPGVGEKTAIGLLQGMGGGLETIYGDLERVKTLSFRGAKTLPKKLEEHRDQ
AFLSYQLATIKTDCELPVGLDDLDIAHPDREALVELYKEMEFKQWLAELLAGSDEGVDDV
NGGEPAPDNAASDVTDSAVTSSQRHDHVIVEQAEFDAWLARLKKAERFCFDLETTSLNYM
DADIVGVGLALEAGEAAYIPLAHDYLDAPAQLDRQQVLQALKPLLEDPEKTKIGQNLKYD
ISVLANYDIRVVGPLADTMLASYVLNSTATRHDMDSLALKYLGEKTISFEEIAGKGAKQL
TFNQIALEQAVPYACEDVDITLRLQAILRPQVEREGRLADVLDYLELPLINVLSRIERNG
VALDAERLHEQSQQLERRIRELESEAFELAGREFNLGSPKQLGQILFEEQKIPVIKKTPK
GAPSTAEAVLEELALDYPLPKVIMQHRGLAKLKSTYTDKLPRLLNKATGRVHTSYHQAVT
ATGRLSSSDPNLQNIPIRTEEGRKIRQAFIARPGYRIVAADYSQIELRIMAHLSEDKGLL
EAFAEGRDIHTATAAEVFGTALEKVSADQRRSAKAINFGLIYGMSAWGLSRQLHIDRNQA
QTYIDRYFDRYPGVARYMDRIRTQAAEDGFVETVLGRRLYLPEIHSQNRNRRQGAERTAI
NAPMQGTAADIIKQAMIDVDAWLAEGDFDALMVMQVHDELVFEVADKQVEAFIEQVQARM
QAAATLSVPLIVEAESGANWDEAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgccccaatcgtgcttgtcgatggctcatcgtacctatatcgcgcttttcac
gcgctgccaccgttaacgacctccaacggccagcctacgggggccgtgaaaggcgtatta
aatatgctcaagcggttgatcaaagactacccggaaagcccaatggcggtggtgtttgat
gcaccaggaaaaacctttcgcgatgagatgtacagcgactacaaagctcatcggccgccc
atgccggatgacctgcgcagccaaattaagccgctgcacgcttgtgtaaaagcgctaggc
ttaccgctgctgtgcattgaaggtgtcgaagccgacgatgtgattggtaccctggctcat
catgccacccaggctggccgtgatgcggtgatctcgactggcgataaagatatggcgcag
ttggtgaatgaccacatcacattggtcaacaccatgaaagaagaaaccctcgatgaaaca
ggcgtcaaagagaaatttggtctaccgccctcgctgatcattgattttttggcattgatg
ggtgacaaggttgataacattcccggcgtgccgggggtgggcgaaaagactgccattggc
ctgttgcaaggcatgggaggtggcttagagacaatttatggcgatcttgagcgcgtcaag
acactcagcttccgtggtgcgaaaacgttaccgaagaagctggaagagcaccgtgaccag
gcctttctctcttatcagttagcaaccattaagaccgactgcgaactgcccgtggggctg
gatgacttggatattgcgcatcccgaccgcgaggcgctggtagaactctataaagaaatg
gagttcaagcagtggttggctgagctactggcaggtagcgacgagggcgtcgatgatgta
aatgggggcgagcctgcgcctgataacgctgctagtgacgtgactgatagcgccgtgact
tccagccagcgacatgaccatgtcatcgttgagcaagctgagtttgatgcgtggctagcg
cgactgaaaaaagccgagcgcttttgcttcgacttagaaacgaccagcctgaattatatg
gacgccgatattgtcggcgttggcctggcgctggaggccggtgaagctgcttatattcca
ctggcccatgactatctggatgcgcccgctcagcttgatcgtcaacaggtcctgcaagca
ttaaaaccgctgctggaagatcctgaaaaaaccaaaattggtcagaaccttaagtacgat
atttccgtgctggcaaactatgatattcgcgtggtggggccgcttgctgacactatgcta
gcctcgtacgtgttgaattccaccgccacgcgtcacgatatggattcgctggcgctgaag
tatttgggcgaaaaaaccatctctttcgaagagatcgctggaaagggggctaagcagctc
acctttaaccagatcgccttagagcaagcggttccttatgcctgtgaagatgtcgatatc
acgctgcggctgcaagcaatactgcgccctcaggtggaacgggaagggcgtttggcggac
gtgttggattatcttgagctaccgctgattaacgtcttgtcgcggattgaacgcaatggc
gttgcgctggatgccgaacgtctacacgagcaaagccagcagctagagcgccgtattcgt
gagcttgaaagcgaagccttcgagttagcaggtcgtgaatttaaccttggttcgcccaaa
cagctgggacagattctgttcgaagagcagaaaattccggtgatcaagaaaacgcccaaa
ggcgcaccctcgaccgcagaggcggtgctagaggagttggcgctggattaccccttgccc
aaggtgattatgcagcaccgggggctggcaaaactaaaatccacctataccgataagcta
ccgcggctgctcaataaagctactgggcgggtgcacaccagctatcatcaagccgttact
gccactgggcggctgtcgtcgtcggacccgaatttacagaacatccctattcgtaccgaa
gagggacgcaaaattcgtcaggcatttattgcccgccctggctatcgcattgtggcggca
gactactcgcaaattgagctgcgtattatggcgcacctctccgaagataaaggacttctg
gaagcgtttgcggaagggcgcgatatccatacagcgaccgctgccgaagtatttggtact
gcgcttgaaaaggtctctgccgaccagcggcgcagcgctaaagcgatcaactttggccta
atttacggcatgagcgcttggggcctgtcacgccagctgcatattgatcgcaatcaggcg
caaacctacatcgaccgctattttgaccgttatcctggcgttgctcgctacatggatcgt
attcgcacccaggccgcagaagatggctttgtggaaaccgtgctagggcgacggctgtac
ctgccagagatccactcgcaaaaccgcaatcgccgtcagggtgctgaacgcaccgccatt
aatgcgcctatgcagggcacggcagcggatatcatcaagcaggcgatgatcgatgtcgat
gcttggcttgctgaaggcgattttgacgccctcatggttatgcaggtgcacgatgagcta
gtgtttgaggtggccgataagcaggttgaggcgtttattgagcaagttcaggcgcgtatg
caagccgctgccacgcttagcgtaccgctgattgttgaagccgaaagcggcgccaactgg
gatgaagctcactag
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