Halomonas sp. MS1: NF683_03810
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Entry
NF683_03810 CDS
T09972
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF683_03810 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hams03019
]
NF683_03810 (recQ)
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_03810 (recQ)
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF683_03810 (recQ)
Messenger RNA biogenesis [BR:
hams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF683_03810 (recQ)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF683_03810 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
HTH_20
HTH_23
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
UTD56350
LinkDB
All DBs
Position
822980..825112
Genome browser
AA seq
710 aa
AA seq
DB search
MHGAPHPAALKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLR
EGTAIVVSPLIALMQDQVAALKQNGVRAAYLNSSLDYHEAVDVENRLRNGELDLLYVAPE
RLATARMQMLLEQTRIALFAIDEAHCVSQWGHDFRPEYRQLSHLQQRFPQVPRIALTATA
DVPTRGDIMEHLQLHEAALYNSGFDRPNIRYHIAENQGNAKEQLLRFIREHHDGEAGIVY
CLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQQHQTRFLRDDGVVVVATIAFGMGIDK
PDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQDSSAADQQK
RIEQQKLDAMLGLCEIISCRRQALLHYFGDPLDTPCGNCDNCLTPPDTWEATVAAQKALS
CVYRTEQRFGVTYLVDVLLGKSNERITRFGHDKISTFGIGGDLSSNEWKALFRQLIASGL
LSVDMEGHGGIRLTANAKPVLRGEQSLTLRKPSKAKAARRSSKGASVAQGHGALWEALRQ
HRKALAEAQGVPAYVIFHDATLAELVEQKPQSLEALGAISGIGARKLADYGEGFLAVILA
HQEIHQDTPSVGSSALESAALLRKGLTPEEVAEQRGLAANTIYRHLSDVIQSGGLALEEV
VDLNPVTLEQIRTAFAHYPDQGLKVVFEALEGRIDYPILHCVRASLAAPR
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgccccccatccagcagccctcaaggtactgcaggaagtatttggctacgat
agctttcgcggccctcagcaggccatcattgagcatgtaattgctgggggcgatgcgctg
gtgctgatgcccaccggcggtggcaagtcactgtgctatcagatccctgccctgctgcgc
gaaggcaccgcgattgtggtctcgccgctgatcgcgctaatgcaggatcaggtggccgcg
cttaagcagaacggggtcagggcggcttatctgaattccagtctcgattatcacgaggcg
gtcgatgtggagaaccgactgcgaaatggcgagttggatctgctctatgttgcacccgag
cggctggccacagcgcgtatgcagatgctgctagaacagacccgaatcgcgctgttcgcc
attgatgaagcccactgcgtctcccagtggggtcacgactttcgccccgaatatcgccag
ctctcccacctgcagcagcgttttccccaggtgccgcgcatcgccctgaccgccactgcc
gatgtgcccacaaggggcgatatcatggagcatctgcagctccacgaggcggcgctttac
aacagcggctttgaccggcccaacattcgctaccatatcgccgagaatcagggtaacgcc
aaggaacagctgctgcgctttattcgcgagcaccacgatggtgaggcgggcattgtgtac
tgcctttcccggcgcaaggtggaggaaaccgccgcctggctggaacgccaggggctgacc
gcactgccttaccacgctgggcttcctgccgagcagcgccagcaacaccaaacccgcttt
ctgcgtgacgatggcgtggtggtagtggccaccatcgccttcggcatgggcatcgacaag
ccggacgtgcgctttgtcgcccacctcaacctgcccaaaagcatcgaagcctactaccaa
gagactggccgtgccgggcgcgacggcctgcccgccgatgcctggatggcctacgggctt
caggatgtaatcaccctgcgccagatgcagcaggactccagcgccgccgaccagcaaaag
cgcatcgagcagcagaaactcgacgccatgctggggctttgcgaaatcatcagttgccga
cgccaggcgcttctccactactttggcgaccctctggacacgccctgcggcaactgcgac
aactgcctgaccccgcccgacacttgggaggccaccgtggcggcacaaaaagcgctgtcg
tgtgtctaccgcaccgaacagcgcttcggcgtgacctatctcgtggacgtgttgttgggc
aaaagcaacgagcgtatcacccgctttggccacgacaagatcagcacctttggcattggc
ggcgacctttcgtccaacgaatggaaggcgctgtttcgccaattgattgcgagcggtttg
ctaagcgtggatatggaaggtcacggcgggattcgcttaacggccaacgccaagccagta
ctgcgtggcgaacagtcgctaaccctgcgtaagccaagcaaggccaaggccgcccggcgc
agcagcaagggcgcttcggtagcgcaaggccacggcgcgctgtgggaagccctgcgccag
caccgcaaggcacttgccgaagcccagggcgtgcctgcctatgtaatcttccacgatgcc
actctggccgaactggtcgaacagaaaccccaaagcctagaggcactgggcgcgatctcg
ggtatcggtgcgcgcaagctggcggattacggtgagggttttctggccgttattctggcg
caccaggaaatccatcaagacaccccgtccgtgggcagcagtgccttggaatccgccgcc
ttgctgcgcaaggggttaacacctgaggaagtcgccgagcaacgcggcctggccgccaac
accatttatcgccacctgagtgatgtgattcaaagcggcgggctggcgctggaagaagtc
gtcgacttgaatcccgtaaccctggagcagatccgcaccgcctttgcgcactatccagac
caagggctgaaagtggttttcgaggcactggaagggcgtatcgattatcccatcctacac
tgtgtacgggcgtctctggcggcaccacgttag
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