Halomonas sp. MS1: NF683_06635
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Entry
NF683_06635 CDS
T09972
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03420
Nucleotide excision repair
hams03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NF683_06635 (uvrD)
03430 Mismatch repair
NF683_06635 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_06635 (uvrD)
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF683_06635 (uvrD)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF683_06635 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NF683_06635 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
UTD56897
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All DBs
Position
1488192..1490390
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AA seq
732 aa
AA seq
DB search
MDDVTAILDQLNPAQREAVSAPQGNLLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYALLA
VTFTNKAAREMRTRLEALLSISMRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLVKRMLKDYSIDDERFPPRQVQGFISGCKEEGLRPHQVNVDGDGYLGQMVELYERYQF
ICERGGLVDFGELLLRSLELLRDNPPLLNHYRERFGHVLVDEFQDTNTLQYAWLKLLTGL
QTPMTAVGDDDQSIYGWRGAKVENIRRFEEEFPNTHTVRLEQNYRSTSAILEAANTLISH
NSERLGKNLWTDGVEGDPISVYAGFNDLEEARYIVDTIKEKVDEGFNRRDVAILYRSNAQ
SRLLEETLIRQGMPYRIYGGHRFYERLEIKNALAYLRLLLNRDDDASLERVINVPTRGIG
TRTVEIVRHRAREQSISLWQALHDAIQDGSLKGRAANAVQTFANLIEQLDNDASGLPLHE
IIDHITTHTGLIEHHKSERGEKGQARVENLEELVTAARAFTHGDAFETPEAGEGMAALEA
FLSEAALNAGDHEADEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSIEEPGRLE
EERRLCYVGVTRAMQKLYLTHAETRRLHGKEVFPRPSRFLRELPPHLLEEVRLRGHISRP
VTASRSSFAQQRVESDGDLPALHVGQRVMHPVFGEGIILNAEGEGARARVQVSFEGEGVK
WLVLGFAKLTPL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgatacttgatcagcttaaccctgcccagcgcgaggcagtaagc
gcaccccagggtaacttactggtactggcgggtgccgggtccggtaaaacccgcgtgctg
gttcatcgcattgcttggctaatgcaggccgaagggctttcgccgtatgccctgctggcg
gtcacgtttaccaacaaggccgcgcgggaaatgcgcactcgtctggaagctctgctgagc
atctccatgcgccatgtatgggttggcacgtttcactccatcgcccatcgcctactgcgc
actcactggcaggatgctcggctgccacagcacttccaaatcatcgactccgatgaccag
ttacggctggtaaaacggatgctcaaagattattccatcgatgatgagcgcttcccgccc
cgccaggtgcaaggctttatctctggctgcaaagaggaaggcctgcgcccccatcaagtc
aacgtggacggcgatggttatcttggccagatggtagagctttatgagcgctaccaattt
atctgcgaacgcggcggcctagtggacttcggtgaactgctactgcgcagcctagaactg
ttgcgtgacaatccgcctttgctaaaccattaccgcgagcgctttggtcatgtattggtc
gatgagtttcaggacaccaatacgctgcaatacgcgtggttaaaactactcactgggcta
caaacaccgatgaccgccgtcggtgacgatgatcagtcaatttacggttggcgtggcgcc
aaagtggaaaatattcgccgctttgaggaggagtttcctaacactcacaccgtacgccta
gagcagaactaccgctccacaagcgcgattctggaagccgctaacacgctgatcagtcat
aacagcgagcggctgggtaaaaacctatggactgacggtgtcgaaggcgaccccatttct
gtttatgccgggtttaacgacttagaagaagcccgctatatcgtcgataccatcaaagaa
aaggtcgatgaagggtttaatcgccgcgatgttgccattctttaccgctccaatgctcaa
tcgcgtttactggaagagacgctgatccgccaaggcatgccctaccgtatttacggcggg
caccgcttctatgagcgcttagagatcaaaaatgccttagcttatctgcgcctactgctt
aatcgtgatgacgatgcctctttggagcgcgtgattaacgtacctacccgcgggataggc
acccgtacggtagaaattgtgcgccatcgtgcccgagaacaaagcatttctctgtggcag
gcgctgcacgatgccattcaagacggctcgctaaaaggccgcgcagccaacgcggtgcag
acatttgccaacctcattgagcaattagacaacgatgcatctggcctgccgctgcatgaa
attatcgaccacatcaccacgcataccggcctgatcgagcatcacaagagcgagcgcggc
gaaaaaggccaagcgcgcgtggaaaacctggaagagctggtgactgctgcgcgcgccttt
acccacggcgatgccttcgaaaccccggaagcaggcgaaggtatggcagcgctggaagcg
tttctttccgaagcggcacttaatgcgggcgaccatgaagccgatgaatttgaagacagc
gtgcagctgatgaccctgcactctgctaagggcttggagtttcccgtggtgtttattgcc
ggcgttgaagagggcctatttcctcataaaatgtcgatcgaagagccagggcggctcgaa
gaggaaagacgactttgctatgtcggcgttacccgcgcgatgcagaaactctacctgacc
catgccgaaacccgccgcctgcacggcaaagaagtgttccccaggccatcgcgctttcta
cgtgaacttccgccccatctgttggaagaagtccgcctacgcggtcatatttcccgtccc
gttaccgcctcacgctcaagttttgcgcaacagcgggttgaaagcgacggcgatctacct
gccctgcatgttggccagcgggtaatgcatccagtgtttggcgaaggcataattttaaac
gcggaaggcgaaggtgcccgcgcccgcgtacaggtcagctttgaaggtgaaggggtgaaa
tggctcgtactagggtttgccaaactcaccccactttga
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