KEGG   Halomonas sp. MS1: NF683_07485
Entry
NF683_07485       CDS       T09972                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
hams  Halomonas sp. MS1
Pathway
hams02020  Two-component system
Brite
KEGG Orthology (KO) [BR:hams00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NF683_07485
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:hams02022]
    NF683_07485
Two-component system [BR:hams02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   NF683_07485
SSDB
Motif
Pfam: Sigma54_activat Response_reg AAA_lid_14 Sigma54_activ_2 HTH_8 AAA_5 AAA_16 AAA AAA_2 AAA_7 bpMoxR FleQ DUF6716 HTH_17 AAA_22 HTH_28 DUF815 Torsin
Other DBs
NCBI-ProteinID: UTD57058
LinkDB
Position
complement(1673009..1674391)
AA seq 460 aa
MHEPSTLPVMVIDDEPHLRITASQTLELAGYTPHCFESAEQALEALPANFPGVIVSDIRM
PGMDGMALLHELHSRDATLPIILITGHGDISTAVEAMRAGAWDFLEKPFAGDQLLDVVRR
GIEKRQLSLENLRLKAELEVQQAALGPRLVGRTPVISRLAAMIQRISQVEADVLLFGETG
TGKDLVARAIHERSARRNSPFMAINCGAVPENTIESELFGHEKGAFTGAVERRIGKFEHA
NGGTVFLDEIESMPLALQVKLLRVLQERSVERLGANETVPLNIRVIAATKVDLKVAAEEG
SFREDLYYRLNVVTLPLPALRERREDIPLLFQHFAVVAANRSGLEAPTLGSHSIAALLAH
DWPGNVRELRNLAERYVLLGAAFDYRLDALLEGANSDTEEPTLPRQVELFEKSLISQSLS
RHHGRVTDVCRHLGIPRKTFYDKLKKHSLSADDYRHSSDP
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgcatgagccgtcgacgctgccggtcatggtgatcgacgacgaaccgcacctgcgtatc
accgccagccaaacactcgaactcgctggctacacgcctcactgttttgagtctgcagaa
caagcgcttgaggcactaccagcaaactttcccggcgtaatcgtgagtgatattcgcatg
cctggaatggacggtatggcgctattacatgaattacacagccgtgatgccacactgccg
attatcttaatcactggccacggtgacatctcaaccgcggtcgaggcgatgcgcgcaggt
gcttgggattttctggaaaagccttttgctggggatcagctactcgatgtcgtgaggcga
ggaatcgaaaagcgccagctgagcctagaaaatttacgcttaaaggccgagcttgaggtt
cagcaggcagctcttgggccacgccttgtaggccgcacacccgtgatttctcgtctggca
gcaatgattcagcgcatcagccaagtagaggctgatgtgctgctatttggcgaaaccggc
acaggaaaagaccttgtcgcccgcgccattcatgaacgtagcgcccggcgcaatagcccg
tttatggcgatcaactgcggcgcagtaccagaaaacaccatagagtcagaactgtttggc
catgagaaaggcgcctttaccggcgctgtagaacggcgaattggtaaattcgagcatgcc
aatggtggcaccgtgttcctggatgaaatcgaatcaatgccattggcacttcaggtgaag
ctgttgcgcgtattgcaagagcgtagcgtcgagcgcctaggggccaacgagacagtgcca
ctcaatatacgagtaattgccgccaccaaagtggatctcaaagtcgctgctgaagagggt
agctttcgcgaagacctctactatcgactcaacgtggttaccctgccactgcccgcgcta
cgcgaacggcgtgaggacattccgctgctgttccagcatttcgccgtggtcgctgccaac
cgtagcggtttagaagcgcccaccctgggcagccattcaatagccgccctgctggcccac
gactggcctggtaatgttcgcgaactgcgtaaccttgctgagcgttatgtgttactggga
gcagcctttgactaccgcctggatgcgctactggaaggggccaactccgacaccgaagag
ccaacgttgccgcgccaggtagagctatttgaaaagagcctgattagccaatccctgtcc
cgccatcatgggcgcgtaaccgacgtatgccgtcacctgggaataccccgcaaaaccttc
tatgacaaactcaaaaaacacagtttaagcgctgacgattatcgccatagcagcgaccct
tga

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