Halomonas sp. MS1: NF683_07915
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Entry
NF683_07915 CDS
T09972
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hams
Halomonas sp. MS1
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hams03021
]
NF683_07915 (rapA)
Transcription machinery [BR:
hams03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
NF683_07915 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Rab11-FIP3
YGR130C_N
Motif
Other DBs
NCBI-ProteinID:
UTD57134
LinkDB
All DBs
Position
complement(1765735..1768680)
Genome browser
AA seq
981 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTVLNCDARSVTILFSASQETRTYNTRQAPLTRVMFGGGD
RVISADGWQMIVDDSKETSGLITYIGEDSDGNPRELSEAKLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHYQRIEQHSALGFAGPRIDLIPHQLYIADEVAGRHAPRVLLADEVGL
GKTIEAGLVLHRLLLAGRVERALILVPDSLTHQWLVELLRRFSLKVSLLDEQQSLAHGSA
NPFESAQIVLASQGWLFANTHRQEQALASHFDLLIVDEAHHLDWSPDGSGPGYQCVEQLA
ADIPGLLLLTATPEQMGVESHFARLRLLDAERYHDIERFKDEEHHYIAVAQAIDALDELP
NTVEARERVDNVADDRDSQALLATLCNPEASTEQQNAARAQLRDALLDRHGTGRVMFRNS
RRHVGGFPERRLHLAQLELPSAYRRVLRRLERDDDYLDELLIETGMDHPDVLIYPDTMYR
ELSNDPLNTESWWHIDPRVNWLLEKLSDDSDSGFANDKVLIIAHHRETAEGLAEGLRVLG
GYHAPVFHEGLSLVERDRAAAAFADEEDGCQVLVCSEIGSEGRNFQFCRHLVMFDMPQHP
DQLEQRIGRLDRIGQRHAIELHAPTFTGSPGERLLRWYHEGMDAFSAPHGIGSDLFDAFG
DALADALLDDEMLNEIIDETREMFTAKLAERDAGRNRLLELNACRPARAQQVIDAVCELD
EDPALPRFVERALDIFGVDSQEIGNGLLYLQPSQHMLDGLPGLVKGEEGFSATYSRSLAL
ARDDIQRLSWEHPLLREMMERILDGTMGNTALALLRHPAIPSGRLMAELVFRTQCPAPKS
LHINRFLPPTAVRVLLDESGANLTSKISFTGLGKNLQKVNKSLARDLIKSRHDQLRALLI
QGEGEAERELPSIVESAETRMRAQLDAELARLTALAEHNPAVRSEELEALKQERQALSDA
IENTRLRLDSVRVIITVDPNA
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttctcccggccagcgttggattagcgacggcgaggctgagcttggactc
ggcaccgtgcttaactgcgacgcccgtagcgttaccattttgttcagtgccagccaggaa
acccgtacgtacaacactcgccaagcccccttaactcgcgtcatgttcggcggtggcgac
cgcgtgatttctgctgatggctggcagatgatcgtagacgatagcaaagagaccagcggc
ttaatcacttatattggcgaagatagcgacggcaatcctcgtgagctatccgaggcaaag
cttgccgataccatgcagtttgatcaggcgcgcgatcggctgctgactggccaggttgat
cgcaatgattggttcgatctgcgctttcgcacgctgcaccactatcagcgcatcgaacag
cacagcgccctgggctttgctgggccgcgtatcgatctgattccccaccagctttatatc
gctgacgaagtggcaggccgccatgcgccgcgtgtcttgcttgcggacgaagttgggctg
ggtaaaacgatcgaggctgggttggttctgcaccgcctcctcctggctggccgagtagaa
cgcgcattaattttggtgcctgacagccttacccaccaatggctagtagagcttttacgc
cgtttctcacttaaggtcagcttgctagatgagcagcaaagtctcgcccacggtagcgct
aacccatttgaaagcgctcaaatagtactggccagtcaaggttggctattcgccaacaca
caccgtcaagaacaggccctggcgagccactttgacctgctgatcgtcgatgaagcccac
catctcgactggagccctgatggcagcggtccaggctatcagtgcgttgagcagcttgct
gctgatattcctggcttattgctgctgacggccacgccagagcagatgggggtggagagc
cattttgctcgcctgcgcttgctagatgccgagcgttaccacgatatcgaacgctttaaa
gacgaagagcatcattacatcgctgtcgctcaagccattgatgccttggatgagctaccc
aataccgtcgaggcccgtgaacgggtcgataatgtcgcggacgaccgcgacagtcaggcg
ctgctagcaacgctatgcaaccctgaagccagtaccgaacagcagaatgctgctcgcgct
cagttacgcgatgctctgcttgatcgtcacggtaccgggcgcgtcatgttccgcaacagc
cgccgtcatgtgggaggattcccagaacgtcgcctgcacctagctcagttggaactccca
tcggcctatcggcgcgtgcttcgtcgcttggaacgcgatgatgactacctggatgagctg
ctgattgaaacgggcatggatcacccggacgtattgatctatccagacacgatgtaccgt
gagctcagcaacgacccgcttaacaccgaatcctggtggcatatcgacccacgggtaaac
tggctgctggaaaaacttagcgacgatagcgatagcggctttgccaatgacaaagtactg
attattgctcaccacagagaaaccgctgaaggacttgccgaagggctgcgcgtactaggc
ggctatcacgcaccggtgttccacgaagggctatcgctggtggagcgtgaccgggccgcg
gcggcatttgccgatgaagaagacggttgccaagtgctggtgtgctctgaaattggctca
gaaggccgcaactttcagttctgccgccacttggtgatgtttgatatgccccagcatccc
gaccagctggagcagcgtatcggccgcctcgaccggatagggcagcgccacgccattgaa
ctccatgcccccaccttcactggcagcccaggcgagcgcctgctgcgctggtaccacgaa
ggcatggatgcttttagcgcgcctcacggcattggcagcgacctctttgatgcgtttggc
gatgctctggccgatgcgttactcgatgatgaaatgctcaatgagatcatcgatgaaacc
cgtgaaatgttcaccgccaaattggctgagcgggacgcaggtcgtaaccgactgctagaa
ctaaacgcctgccgccctgcccgtgctcagcaggtaattgatgcggtgtgtgagttggat
gaagacccggcgttgccgcgttttgtagagcgcgccctggatatttttggcgtagacagt
caagagattggcaatggcttgctttatttacagcctagccaacacatgctggatgggctc
cccgggctagtgaaaggtgaagagggcttctcggctacttacagccgttcgctggcactt
gcacgagacgatattcagcgactctcttgggaacacccgctgctgcgcgaaatgatggag
cgcattctagatggcacaatgggtaacaccgcgttggcgctattacgccatcccgccatt
cccagcggccgtttaatggctgaactggtgttccgcacccagtgccctgcacctaaatcg
ctgcacatcaaccgcttcctgccgcccacggcagtgcgcgtcctgcttgatgagtcaggc
gcaaacctaaccagcaagatctccttcactggtcttggcaagaatctacagaaagtgaac
aaatcactggcacgagatttgatcaagagccgccatgaccagctgcgtgcgcttctcatt
cagggggaaggtgaagccgaacgtgaactgcccagcatcgtagaaagtgctgaaacacgc
atgcgagctcagttagatgccgaactagcccgcttgaccgccctggcagagcacaaccca
gctgttcgtagtgaagagcttgaggcgctgaagcaagagcgccaagcgctcagcgacgcg
atagaaaacactcgcttacggcttgattccgtgcgagtgataatcaccgtcgaccccaac
gcctaa
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