Halomonas sp. MS1: NF683_08030
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Entry
NF683_08030 CDS
T09972
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NF683_08030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hams03021
]
NF683_08030 (rpoC)
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_08030 (rpoC)
Enzymes [BR:
hams01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NF683_08030 (rpoC)
Transcription machinery [BR:
hams03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NF683_08030 (rpoC)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NF683_08030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UTD57153
LinkDB
All DBs
Position
1789521..1793735
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVEEETGERSFHRRIYDTTVGRALLFRILPEGVPFSLIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAIDVIDPSNDEVLIPRGTLLDEKWCASLDTMGVDEIIVRSTITCDTAHGVCASCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDGGAIVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LKDAAGEYVSVSGSNTPVQYLLPGNSIISADDGATIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESSILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GESVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEISDSGDSDFITGDQAELVRVLEQNARLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cccgagaccatcaactaccgtacctttaaaccggaacgggatggtctgttctgcgccaag
attttcggcccagtcaaagactacgagtgtttgtgcggtaagtataagcgcatgaagcac
cgcggtatcatttgtgagaagtgtggcgttgaagtcaccaaggctgccgtgcgccgtgag
cgcatgggccacatcgaactggcatcgccagtggctcacatttggttcttgaagtcactg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgtcgtcatcgatcccggtatgaccacgctggagcgtggtcagttactc
aacgatgagcagtactttgaagcgctagaagagttcggtgatgacttcgacgcccgtatg
ggtgctgaagctgtccaagaactgctgaaagatattgatctggaagaagagattaatcac
ctgcgtgaagagattccgcagactaactctgaaactaagattaagaagctttcaaagcgc
ttgaagctgcttgaagcgttctatcactccggcaacgcgccggcgtggatggtcatggaa
gtgctgcccgtgctgccgccggatcttcgtccgttggtaccgctggacggcggccgcttc
gcgacctcagacctgaacgatctttatcgtcgcgtcattaaccgtaacaaccgtctgaag
cgtctgcttgacctcaatgcgccggatattatcgtgcgtaacgagaagcgtatgctgcaa
gaagcggttgatgcgttgttggataacggccgtcgtggtcgtgccattacgggttctaac
aagcgtccgctgaaatcccttgccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctaggtaagcgcgtcgattactccggccgttcggtaatcactgttggtccgacg
ctgcgtctgcaccagtgtggtctgcccaagaaaatggcacttgagctgttcaagccgttt
atctactccaagctgcagtcgctgggctatgcctcaacgatcaaagctgccaagaagatg
gttgaacgcgaattgcccgaggtgtgggacattctcgccgatgttatccgtgagcacccg
gtactgcttaaccgcgcaccgacgctccaccgtcttggtatccaagcgtttgagccgctg
ttgatcgaaggtaaagcaatccagctgcacccgctggtatgtgccgcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgaccctggaagcccagcttgaagcg
cgtgcgctgatgatggccaccaataacgtgctgtcgcccgctaacggcgagccgattatc
gtgccgtcgcaagacgttgttctgggtctgtattacatgacccgtgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgaccttaatgaggtggagcgcgcgttcggcacgcag
tcagtatcgctgcacgctcgcgtgaaagtgcgtctggacgaagtcgatgtcgaagaagag
accggcgagcgtagtttccatcgccgcatctacgacacgacggttggccgtgcgctactg
ttccgcattttgccggaaggtgtgccgttctcgctaatcgatcagccgatgaagaaaaag
gcgatctctagcttgatcaacgaggtataccgtcgtgcaggtttgaaaccgacggttatc
ttcgctgaccaactgatgtacaccggtttccgtttggcaacctggtcgggcgcctctatc
ggtgttaacgacttcgttattcctgatgcgaaaaccgagattgtcgacgctgcagaagcg
gaagttaaagagatcgaagatcagttctcttctggcctggtaaccgccggtgagaagtac
aacaaggtcatcgatatctggtcgaaggccaacgataaagttgccaaggcgatgatggta
ggtatctctaaagagaccgtcatcgaccgtgaaggcaacgaagttgagcaagactcgttc
aacagcgtctttatcatggctgactccggtgcgcgtggttctgccgcccagatccgtcag
ttggcgggtatgcgtggcttgatggctaagccggatggctcgatcatcgaaacgccgatc
gtcgccaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgca
cgtaaaggtcttgcggatacggctctgaaaacggctaactccggttacctgacccgtcgt
ctggttgacgttgcccaggacttggtcatcactgagaccgattgtggcaccgaaaacggc
ttgaccctgcacccgatcatcgaaggtggcgacatcattgtaccgctgtctcagcgtgtc
cttggtcgtgtcgttgcgattgatgttattgatccaagtaatgatgaagtgcttattccg
cgcggcacattgctggacgaaaagtggtgtgcatcgctagacaccatgggtgtcgacgag
atcattgttcgttctaccattacttgtgacactgcccacggcgtgtgtgcctcctgttat
ggccgcgacttggcgcgtggccatcaggtcaacattggtgagtctgtcggtgttatcgct
gcacagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgctcatcggcagtcgacagcgttcaggttaagcatggtggtaaagtacgt
ctccacaacatcaagcatgtagagcgggccgacggcaaattggtcgttgtctctcgctcc
agcgcacttgcagtggctgatgaccatggccgcgagcgtgagtactacaagctgccttac
ggtgcagagctgtccgttcgtgacggtgatgttgtcgatggcggtgcgattgtcgcgaag
tgggatccgcacactcatccgatcattgccgaagtagaaggtaaggcgcagtttatcgac
cttgacgaaggtgtcaccatgcaccgtagcgtcgacgaaatgactggtctgtcctctatt
gaggttatcgagtcggcagcccgcccgatggcaggccgcgataagcgcccgatggtgatg
ctgaaagatgctgctggcgagtacgtgtcggtgtctggatcgaatacgccggtacagtat
ctgctgccgggcaactcgattatctccgccgatgatggcgctaccattggtgtaggtgaa
gttgttgcacgtattccggtagaagcgtctggtaacaaagatattaccggtggtctgccg
cgtgttgccgacttgtttgaggcgcgtaagccgaaagagtcgtcaatcttggctgaaatc
agtggtgtggtcagtttcggtaaagagacaaagggtaagcgtcgtttgacgattactcca
gagtctggcgacccgtttgaagctctgatcccgaagtggcgtcaaatcgctgtcttcgag
ggtgaaagcgttgagaagggtgaggtaatctcggatggtccgagcaacccccacgatatc
ctgcgcttattgggcgtggcggaactggctaaatacatcaccgccgaagtgcaagatgtt
taccgcctgcagggtgtaggcatcaacgataagcatatcgaagtcattgttcgtcagatg
ctgcgtaaggtagagatctctgattcaggtgactctgactttattactggcgatcaagct
gaactcgtacgcgtgctagaacaaaatgcacgtctcgagaaagaaggtaaattcccggcc
aagtatcaacgcttgttgttgggtattactaaggccagcttggccactgagtcgttcatt
tcagcggcgtcgttccaggaaacgacacgtgtattgaccgaagcagcggtgaccggcaag
cgcgattatttacgcggcctgaaagaaaacgtggtggttgggcgtctgattccggcaggt
accggtctgactcaccacgcagagcgtcgtcgcaaacgcgaagacgttgagcgtctgttc
aacccctcggctaccgaagttgagcaggagcttggtgctcagttaaccgcccttgattca
gacgacgagctgtaa
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integrated database retrieval system
