Halomonas sp. MS1: NF683_08500
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Entry
NF683_08500 CDS
T09972
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NF683_08500
09124 Replication and repair
03420 Nucleotide excision repair
NF683_08500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hams03021
]
NF683_08500
03036 Chromosome and associated proteins [BR:
hams03036
]
NF683_08500
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_08500
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
NF683_08500
Transcription machinery [BR:
hams03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NF683_08500
Chromosome and associated proteins [BR:
hams03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
NF683_08500
DNA repair and recombination proteins [BR:
hams03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NF683_08500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
UTD57242
LinkDB
All DBs
Position
1879948..1882266
Genome browser
AA seq
772 aa
AA seq
DB search
MSRYRVAVRTLCDFTAREGDLDHRFTPAPSAQEGIEGHGLVASRRGEDYLAELPLSGEYQ
GLRVAGRADGFDPSANRLEEVKTYRGNLDRMAANQRALHWAQVKVYGALLCAERCLERVT
LVLVYLEISSGQETLLTHDASATELQAFFTDHCQRFLAWAEQESAHRQRRDEWLATLTFP
YPDFRPGQRTLAEDVYKAASTGRCLLAQAPTGIGKTLGTLFPMLTAMPRQQLDRLAFLTM
KTPGRRVALDALARLVTSSSSPPTSSSSTASALASPLRVLELVARQKACEYPGTACQGDA
CPLAAGFYDRLPAARQAAVARRWLDRDGLREVALAHSVCPYYLGQELARWADVVVGDVNH
WFDSHALLHGLAQANDWRVGLLIDEAHNLVERARGMYSAELSQQRLSRLRRRSPPALAKP
LARVGRQWQALTKEVTTDAAASQRYHLLDALPNKLVAAMQTLAGAITDYLVEHPDASSIE
LQELLFDALTFCRLAERFGDHSLCDLASYGRGDAVLGLRNVIPADFLAARFKAASSAVLF
SATLTPFHYYRDLLGLPESSVWREVASPFAARQLEVRIRADISTRYHHREASVAPIVEVL
ADQYQRQPGHYLAFFSSFAYLEQVMTQFQHAHPSVPMFAQTRGMQEAERDAFLARFTPGG
KGIGFAVLGGAFAEGVDLPGERLIGAFIATLGLPPFNDFNEALKARLNTRFGQGDDYTYR
IPGMIKVVQAAGRVIRSPEDEGVVILMDDRFAQAKVRALLPRWWGLGNHSSS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgagccgttaccgggtagcggtgcgcacgctctgtgactttaccgcacgggagggcgac
cttgatcatcgctttacgccagcacccagcgctcaggaaggtatcgaaggacatgggtta
gtggctagccgccggggcgaggattacttggccgaactgccgctttccggtgagtatcag
gggcttcgcgtggcgggccgcgctgacggctttgaccccagcgctaaccgtttggaagag
gtcaaaacctatcgtggcaatctagatcgcatggcggccaatcagcgtgcgttgcactgg
gcgcaggtgaaagtatacggcgcgctgctgtgtgccgagcgctgccttgagcgggtcacg
ctggtgttagtgtatctggagattagcagcggccaggaaacactgcttacccacgacgct
agcgccaccgagttgcaagcgttttttaccgatcactgccaacgctttttggcctgggca
gagcaggagtctgcccatcgccagcgccgcgatgagtggctggcgacgctgacgtttccc
tatcctgattttcgccctgggcagcgcacgttggcggaagatgtctataaagccgccagc
accgggcggtgcctactggcccaagcccctaccggcattggcaaaacccttggcacgcta
tttccgatgctgactgcaatgccccgtcagcagctggataggctggcctttctgaccatg
aaaaccccaggccgccgtgtggcgctggatgcgctggcgcgtcttgttacctccagttca
tcaccgcctacttcatcttcctccacggcgtctgcgctcgcatcgccgctgcgggtgttg
gaactggtggccagacaaaaagcctgcgagtacccaggcaccgcttgccaaggcgatgct
tgcccgttagcagcaggtttttatgaccgcttgccggccgctcgccaagccgcggtggca
cgtcgctggctagatcgtgacggactgcgagaggtggcgcttgcccacagtgtgtgcccg
tattatctaggccaggaactagcccgctgggccgacgtggtcgtgggcgatgtgaatcac
tggtttgatagccatgcgctgctgcatggtttggcccaagccaacgactggcgggtaggc
ctgctgatagatgaagcgcacaacttagttgagcgagcgcggggcatgtacagtgccgag
ctttcccagcagcgcttgagccgcctgcgtcgccgctcacctcccgcgcttgctaaaccg
ctagcccgtgtcggtaggcagtggcaggcgctaacgaaggaagtcaccaccgatgcagcg
gcgtcacagcgttaccatttacttgatgcgctgcccaacaaactggtggccgcgatgcaa
accttggctggcgcgatcaccgattatttggttgagcaccccgacgcttcaagcattgag
cttcaagagctgctgtttgacgcattgaccttctgccgtttggcggagcggtttggtgac
cactcactttgcgaccttgccagttatggccgaggcgacgcagtgctagggctgcgcaat
gttattccggcggattttctggcggcacgcttcaaggctgccagcagcgcagtgttgttt
tcggccacgctgaccccgtttcactactaccgagatttactcgggttaccggaaagcagt
gtgtggcgggaagtggcctcaccgtttgccgcccgccagttggaagtgcgtattcgcgcc
gatatttccactcgctatcatcaccgtgaggcctctgtggcgcctattgtggaagtcctg
gccgaccagtatcagcgtcaacctggccactatctggcgttttttagtagctttgcttat
ctggagcaggtgatgacgcagtttcagcacgcacatcccagcgtgccgatgtttgcccaa
acccgtggaatgcaggaagccgagcgcgacgcctttctggcgcgctttaccccgggtggt
aagggaatcggctttgcagtgctgggcggtgctttcgccgaaggggtcgacctgcctggc
gagcgactaatcggcgcgtttattgccaccttaggcctgccgccgtttaacgactttaac
gaagcgctgaaagcgcgcctgaacacccgcttcggccagggcgacgactacacctaccgc
atacccggcatgatcaaagtggtgcaggccgctggaagggtgattcgcagccccgaggat
gaaggggttgtgatattaatggacgaccgttttgcccaggccaaggtgcgcgcattgctg
ccacgctggtgggggctaggcaaccactcatcttcttag
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integrated database retrieval system
