Halomonas sp. MS1: NF683_10000
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Entry
NF683_10000 CDS
T09972
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hams
Halomonas sp. MS1
Pathway
hams03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF683_10000 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hams03021
]
NF683_10000 (rho)
03019 Messenger RNA biogenesis [BR:
hams03019
]
NF683_10000 (rho)
Transcription machinery [BR:
hams03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NF683_10000 (rho)
Messenger RNA biogenesis [BR:
hams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NF683_10000 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
UTD57506
LinkDB
All DBs
Position
2201123..2202382
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AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDRPENAKHKILFENLTPLFPDDRLRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcactgaactcaagcaaaaaaccgttcccgagctgctcgatatcgcccgcgag
atgggtatcgacaacttagcccgttcgcgcaagcaggacatcattttcgccatcctcaaa
aagcatgctaaaagtggagaggatatttatggcgatggtgtgctggaaatccttcaggat
ggcttcggcttcctgcgtagcgctgacagctcgtacctcgctggaccggatgatatctac
gtatcgccgtctcagatccgtcgtttcaatctgcgtaaaggcgactccatttccggcaaa
atccgcccgcctaaagaaggtgagcgctactttgccctgctcaaagttagccagatcaac
tttgatcgtccggaaaatgccaagcataagattctctttgagaacttaacgccgctgttc
ccagacgaccggctgcgcatggagattggtaatggctctaccgaagatcttaccgcgcgc
atcattgacctgactgcgccgattggtaaaggtcagcgtggtctgttggtgtcaccgcct
aaagcgggtaagacactgatgctacagaacatcgcgacgtccattacgcgcaacaatcct
gagtgccatctgattgtattgctgatcgatgagcgtcctgaggaagtgaccgaaatgtca
cgcaccgtgcgtggcgaagtggttgcctctaccttcgatgaaccgcccgcccgccatgtg
caggttgcggaaatggtgatcgaaaaagccaagcgtttggtagagcacaagaaggacgtg
gtgattctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtagtgcccagc
tccggcaaagtgctaaccggtggtgtagacgctcacgctcttgagaagccaaaacgtttc
ttcggtgccgcgcgtaatatcgaagagggcggtagcctgacgattattgccactgcactg
gtcgataccggttcgaaaatggacgaagtcattttcgaagagttcaagggcaccggcaac
atggaagcgcaccttgaccgcaagctggctgagaaacgcgtgttccccgcgatcaatatc
cgtcgcagcggtacccgtcgtgaagacctactggcgtcagaagatgaaatgcagcgcatg
tggattcttcgcaagctgctcaacccgatggaagacacggctgctacagaattcctgatt
gatcgtctgaaggataccaagacgaatctggagttctttgaagcgatgaagcgccgctag
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