Halomonas sp. MS1: NF683_10220
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Entry
NF683_10220 CDS
T09972
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF683_10220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hams03019
]
NF683_10220
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_10220
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF683_10220
Messenger RNA biogenesis [BR:
hams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF683_10220
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF683_10220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
UTD57548
LinkDB
All DBs
Position
2247114..2249123
Genome browser
AA seq
669 aa
AA seq
DB search
MTSLSPQQTLKAVFGFDAFRGGQQAVVSRVLEGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLAFLARHGVAAASIDSTQDRATTRDVMGRAKNGELKILMVSVERLK
NERFRHFLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPDYQRDFAIPQVLLLTATATPA
VIADMREKFSIVPENVITTGFYRANLELLVVPAMEKRQQQLIDWLMPQMPPGNEAPTIIY
VTLQQTAEQLASALEAQGIAAQAYHAGLDSARRDDIQRQFMSGESPCIVATIAFGMGIDK
GNIRNVVHFDLPKSIENYSQEIGRAGRDGLPSTCLTIAGRDGLRVLESFVYGDTPEYAGI
LRLLEEISSAGQAPDRQWEVLLNTLSRDTNIRLLPLKTLLVRLEMHGIIAPRFAFLAEYR
LRYHIEPTALVGRFEGERAAFVRLLIDNIAIARTWGTVDFERLHQAGQAQQIDASRARVI
TALEYFQDKGWLTLEGKRMTDVYEICQPEFSVEAVASQLFNECLQRERIEIDRLHSMLAL
FESQSCLTRRLAEHFGDTTFDGPLDTEQGRCGHCSVCYGNPVRLPDATPLPALSEKDFIR
YATPLIERHTEQFGQPPNAQRLAHFLCGLTMPIFTPLKARGLNGFAVFEQRAYPEVRQWA
ERCLASSGS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgctatcaccgcagcagacgctgaaggcagtattcggatttgatgcttttcgc
ggcggccagcaggcggtggtgtccagagtgttggaggggcactccacggcggcgattttt
gccaccggggcggggaagtcactctgttatcagttgcctgcacttcatcttccacacctg
acgctggtggtatcgccgctgctggcactaatgcaggatcagctcgctttcttggcacgc
catggtgttgcagccgccagtattgattccacccaagatcgcgctacgacccgtgatgtg
atggggcgcgccaaaaacggtgagctgaaaatccttatggtgtcggtggagcggcttaag
aacgagcgttttcggcactttctacgccaggttcaaatatcgctgctggtggttgatgaa
gcacactgtctctctgagtggggacataacttccgccccgattaccttaaactgcccgat
tatcagcgtgattttgctattccccaggtgttgctactgacagccacggccacgccagcg
gttatcgctgatatgcgtgagaagttctcaatcgtaccggaaaatgtcattaccactggc
ttttatcgcgctaacttagagcttctggtggtgcccgccatggaaaaacgtcagcaacag
ttgattgattggcttatgccacaaatgccgcctggcaacgaagcgcctacgattatttac
gtcaccttgcagcaaaccgccgagcagttggcaagtgcgctggaggcccaggggattgct
gcccaggcgtaccatgcgggactggattcagcccgccgcgacgacattcagcgccagttt
atgagcggcgaatcgccctgcattgtggctaccattgccttcggcatggggattgataaa
ggcaatatccgcaacgttgtgcactttgatctacctaaatcgattgagaattacagtcag
gaaattggtcgggcagggcgcgatggactgccttccacctgtttaaccattgccggacgc
gatggtctgcgagtgcttgagagcttcgtttacggcgatacgcctgagtacgcgggtatt
ttgcgtttattggaggaaatctcatcagccggtcaagcgccagatcgccagtgggaagtg
ctgctcaacacgctttcccgagataccaatatccgcctgctgccacttaaaacgctactg
gtgcggttggaaatgcacggcataattgcgccgcgctttgcgttcttagccgagtatcgg
ttgcgctaccatattgagcctactgccttggtggggcgctttgaaggagagcgggcagcc
tttgtacgtttgttaatcgacaatattgctattgctcgtacttgggggacggtggatttt
gagcggctgcatcaggctgggcaggcacagcaaattgatgcttcccgtgcccgcgtgatt
accgcgcttgaatacttccaggataaaggttggttgaccctggaaggtaaacgcatgacc
gatgtgtatgaaatttgtcagccggaattttcggtcgaggcggtggcgagccagttgttt
aatgagtgcctacagcgggagcgaatcgaaattgatcggctgcactccatgctggcactg
tttgagtcgcaaagctgcctgactcggcggttagctgagcattttggggataccaccttc
gatggaccacttgataccgagcagggccgctgtggtcactgttcggtatgctacggcaac
ccggttcggctgccggatgcgacgccattacccgcgctgtctgaaaaggattttatccgc
tatgccacaccgctgattgaacgccacaccgaacagttcggccagccgcccaatgcccag
cggctggcacacttcttatgcggtttaactatgccgatttttaccccactcaaagcccgc
ggccttaacggtttcgcggtctttgagcagcgtgcctaccctgaagtgcggcagtgggca
gagcgctgtttagctagctccggcagttaa
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