Halomonas sp. MS1: NF683_12780
Help
Entry
NF683_12780 CDS
T09972
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hams
Halomonas sp. MS1
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hams03016
]
NF683_12780
Enzymes [BR:
hams01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NF683_12780
Transfer RNA biogenesis [BR:
hams03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NF683_12780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
UTD57697
LinkDB
All DBs
Position
complement(2815149..2817089)
Genome browser
AA seq
646 aa
AA seq
DB search
MLQNNSLLAQLKQQIRDTTPRAEGVIKATEKGFGFLETDSGESYFVPPPAMKQVLHGDRV
EAVIHENGDKKSVEPEKLIEAGLDRFVARVQKREDRLAVVPDHPSIRNVLKARIKNSLDE
ATIADGDWVVARLVRHPLKENDRGFFTQIDELVAKADDPAVPWRVTLARHALEQECPDAG
TEWPLHDEGLTREDLTAQPFFTIDGEKTRDMDDALHVEALESGGWRLSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGQDRPALACSLDINADGSLGDY
RFFAANVKSHAKLVYDRVSDWIDGQGEWAPADNIAEQLKALRDLTEARTAWRNEHALVFK
DRPDYVFDLDDAGNVLGIRTEDRRIANRMIEESMIAANACCADFLAKHIGHGIFNVHRAF
EPEKAESAQEFLATQEIEVAQEALTELAHYKELKRALESRDDAWLDARLRRFQGFTSMSA
QPGPHFGLGLPAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEASQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPAAQNQDAFDAEVMAINRGGMRVRLLENGATAFVPAPLMHSDR
DKVVIDDKEGRIQIEGEERYKLGDSLRIALTEAREETRSLVAKPTE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaaacaactcattgcttgcccagctcaagcaacagatccgtgacaccactcca
cgcgctgaaggggtgatcaaagccaccgaaaaaggcttcggttttcttgaaaccgacagc
ggtgaatcttatttcgtgccgccccccgccatgaagcaagtactccatggcgatcgcgtc
gaggcggtgatccatgaaaacggcgacaaaaagtccgtagagcctgagaagctgatcgaa
gctgggcttgaccgctttgttgcccgtgttcagaagcgcgaagaccgtttagccgttgtg
cccgaccatccgtcgattcgcaatgtgctgaaggcgcgcataaagaacagcctggatgaa
gccaccattgctgatggcgactgggttgtcgcgcggctggtacgccacccgctgaaagag
aacgatcgcggcttcttcacgcaaattgatgagctagtggctaaggccgacgaccccgcc
gttccgtggcgcgtcacccttgcccgccatgcgctggaacaagagtgcccggacgcaggt
accgagtggccactgcatgatgaagggttaacccgtgaagacctcacggcgcagcccttc
tttactatcgatggcgaaaaaacccgcgatatggacgacgcgctacacgtggaagcgctg
gagagcggcggttggcggctaagcgttgcgatcgctgacccaacggcctacgtcgaagag
ggccatgcggccgaccttgaagcgcgcacccgtgcttttacggtttacttacccggccaa
aatgtaacgatgttgcctgaacagctggccgatgacctctgctcgctatgggaaggtcag
gaccgccctgcccttgcctgctcgttagacattaatgccgacggcagcctaggtgactac
cgtttctttgcggctaacgtaaaatcccacgccaaactagtctatgaccgcgtttccgac
tggattgacggtcaaggcgagtgggctcccgctgacaatatcgctgaacagctgaaagca
ctgcgcgatttgactgaggcgcgcaccgcttggcgcaacgaacatgcgctggtgtttaaa
gatcgtcctgattacgttttcgacctggacgacgcgggcaacgtcttaggcattcgcacc
gaagatcgccgcattgccaaccgtatgattgaagaatcgatgattgccgctaacgcttgc
tgcgcggatttcctcgccaaacatatcggtcacggtatctttaatgtgcaccgcgctttt
gagcctgaaaaagccgaatctgctcaagagttcttagccactcaggagattgaggttgcc
caggaagcgctgactgagctagctcactacaaagagctgaagcgcgctctggaaagccgt
gatgatgcctggctggacgcgcgcctgcgccgcttccaaggctttaccagcatgtcagct
caacctggcccgcactttggtcttggattaccggcttatgccacctggacgtcgccaatt
cgtaagtacggcgatatggtcaaccatcgtttgatcaagcgtgtgcttaaaggtgaacag
gctccggcagaagccagccagcagctcaccgagcaactcaccgagcggcggcgcctgaac
cgtatggccgaacgcgacgtaaaagattggctctacgttcgctacttaacgccagcggct
caaaaccaagatgccttcgacgcagaggtcatggcgatcaaccgtggtggtatgcgagta
cgcctgttggaaaatggtgctaccgccttcgtacccgccccgctaatgcacagcgatcgc
gataaagtggtcattgatgataaagagggtcgcattcaaattgaaggcgaagagcgctac
aagctgggcgacagcctgcgcattgcgctaacagaagcccgtgaggaaacccgctcgctg
gtcgccaaacccacagaataa
DBGET
integrated database retrieval system
