Halomonas sp. MS1: NF683_13885
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Entry
NF683_13885 CDS
T09972
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hams
Halomonas sp. MS1
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hams03019
]
NF683_13885 (hrpA)
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF683_13885 (hrpA)
Messenger RNA biogenesis [BR:
hams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF683_13885 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
AAA_22
DEAD
AAA_19
nSTAND3
NACHT
T2SSE
AAA_25
AAA_16
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
UTD54244
LinkDB
All DBs
Position
3045197..3049210
Genome browser
AA seq
1337 aa
AA seq
DB search
METEPNVTTDTQTSHADAQNAYPLTVLDEEIRHVMLRDAQQLARRVAGLKRRQRDRKPID
HGVQQVQRDLEKAKRLLANREALKVALDYPAELPVVERREDILNAIRDHQVVVVAGETGS
GKTTQLPKICLELGRGRKGVIGHTQPRRLAARSVAGRLAEEMSVPLGEQVGYQVRFNDQS
SPNTLVKLMTDGILLAETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLK
VIITSATIDVDRFAAHFGSANAPAPVVEVSGRTFPVDVHYRPLARSEEDEDDRTLQEGIL
HAVREIETIEREKGWLHGPRDVLVFLPGEREIRETADTLRRADLTGTEILPLYARLSNEE
QNRVFASHKGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPISQA
SANQRKGRCGRVAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEAF
PFVDPPDSRFVKDGFRLLFELGAVDDQQRLTPLGRKLAKLPIDPRLARMVLAGAERGSLR
DVLIVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQ
LRRWCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPLPRDEDESEEQAKQARRKTSG
KLHQALLSGLLSNLGTLLENREYLGARNRKFMIHPGSGLAKKTPKWVMAFELIETTKLFA
RTVAKIDPQWIEPQAQHLIKSSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGPIA
PQESRELFIRRALVEGEFQTKGEFFAHNRALIEEVEALEDRARRRDILVDEETLFAFYDE
RLPHDIVNGKGFEHWRKQVERESPDLLKFDIEALKARDANDVTQAQYPDHLTLAGVAYPV
SYHFNPDAEDDGVTLTVPAAMLPQLPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPI
PDWVDAALEMLVPDNRPLTEALGEFIRRRTGTRVHPDDWRLDLLAPHLIMNVRVVDHAGK
TLGQGRDVRALERRFEEAASRGAQALAEQANQAPALEGLPIEPLPESRVTTQAGIRVEAY
PALVAEDARFKVALFDHPAKAAAAHQMGVARLAISQQPDQVKAIKRLPGVEKCALLFAKV
GSKNELVDDLLLAVFTQVVAAHPLPRSEQALKQRLQTSEESLLAHAQALLTQVEAALKGH
LAVTKILKGKLNFALALVYSDVSAQMKRLVYPGFIRDAGEWLTEYPRYTEAALIRLEKAA
RERGRDQMLMHDVQALETRFDARRKSERRGDAEDPELVAFGWWIQELRVSLFAQQLGTKM
PVSVKRLEKRWEELVSV
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgagcctaacgtgaccaccgacacgcaaacttcccatgctgacgcccagaac
gcttatccactcaccgtattagatgaggagataaggcacgttatgctgcgtgatgcacag
cagctagcgcgtcgtgtggcaggccttaagcggcgtcaacgagacagaaaaccgatcgac
cacggtgtccaacaagttcagcgcgaccttgaaaaagctaagcgcctgcttgctaaccgt
gaagcactgaaggtggcgctggattatcctgccgagttgcctgtagtagaacgacgagag
gatatcctaaacgctatccgcgaccatcaggtagtggtcgtggcgggggagacagggtca
ggtaaaaccactcagctgcctaaaatttgtttagagcttggccgtgggcgtaaaggggtg
attgggcatacccagccacgccgactggcagcgcgtagcgttgctgggcgattagcggaa
gagatgagcgtgccgctgggtgagcaggtgggctaccaagtacgcttcaatgatcaaagc
tccccaaatacgctcgtaaagctgatgacggacggtatcctgctggcagaaacccagcac
gatcctttgctgctgcgttacgacacgctgattattgatgaggcgcacgagcgcagcctt
aacatcgactttttgctgggttatttaaagcgcctgctgccgaaacgtcctgatctaaaa
gttattattacttcagccaccattgatgtagatcgttttgctgcccatttcggcagtgcc
aacgcgcctgcgccggtggttgaagtctctggccgcacttttcccgtcgatgtgcattac
cgcccgctggcgcgtagcgaagaggatgaggatgaccggacactgcaagaaggcattttg
cacgccgtgcgcgaaatcgaaaccatcgagcgtgagaagggctggctgcatggtccacgc
gatgtgctggtgtttttacccggggagcgggagattcgtgagacagccgatacgctgcga
cgggctgacttaaccggcaccgaaatattgccgctctatgctcggctttccaacgaagag
caaaatcgtgtcttcgcttcccacaaagggcggagaattgtgctggcgactaacgttgcg
gaaacctcgctcacggtaccgggtattcgctacgttattgaccctggcttagtgcggatc
agtcgctacagctatcgggcgaaaatacagcggctaccgattgagccgattagccaggcc
agcgccaatcagcgtaaaggccgctgtggccgtgtagcggaaggggtgtgtattcgtctt
tatgatgaagaagacttcctgtcgcggccagcgtttaccgacccagaaatccagcgcacc
aatttagcgtcagtcatcctttccatgctggcgctgaaacttggcagtatagaagccttt
ccctttgtcgacccgcccgatagccgattcgtaaaagatggctttcgtttgctgtttgag
ctgggggcggtagacgaccagcagcgcctgaccccgctgggccgtaagctagctaagcta
cccatcgacccacgcctagcacgtatggtgctggcaggcgccgaacggggcagcctgcgg
gatgtgttgatagtggtatcggctctggcgatacaagatcctagagatcggcctgctgac
aaacgccaagcggcggatcaagcccaccagcgctggcatgatcccgattctgattttgtt
gcgttgctaaacttatggcatggcatcgaaaatgcccgcgaggctctctcaggcaaccaa
ctacgtcgctggtgtcgcgagcactatattaactatctgcgcatgcgcgaatggcatgac
acgttccgtcaattgcgtcagttgctgcgcgatatggacatcgacgtgcctgcaccgttg
cccagagatgaagacgaaagcgaagagcaagccaagcaagcgcgtcgtaaaacgtcagga
aaactgcaccaagcgctgttatctgggctgctttctaacctgggaaccctgctggaaaat
cgtgaatatctcggtgcgcgtaatcgtaagtttatgattcaccccggttcagggctggcg
aaaaaaacgccgaagtgggtaatggcgtttgagctgattgaaaccactaaattgttcgcc
cggacagtggcgaaaattgacccccagtggattgagcctcaagcgcagcacttgataaaa
agcagctatagcgagccgcactgggaaatgaaacgtgcccaggtagttgcgttcgagcaa
gtaaccctgtttggtctgcctatcgttgcccgtcgccgcgtgcattatggccctattgct
ccccaagagtcccgtgagctgtttattcgtcgtgcgctagtggaaggcgaatttcagact
aagggtgagttttttgcccataaccgagcgttgattgaagaagtcgaggcactcgaagat
cgtgcacgtcggcgcgatattctggtcgatgaagagacgttgtttgctttttatgatgaa
cggctccctcacgatatcgttaatggcaaaggatttgagcactggcgcaagcaggtagag
cgtgagtctcctgacttattaaaattcgatattgaggcacttaaagcacgggatgctaac
gacgtgactcaggcgcagtaccctgaccacctaacgttggcaggggttgcctatccggtt
agctatcactttaatcctgatgcagaagatgatggcgttacgctgaccgtaccagccgct
atgttgcctcagttgcccgtacacgcccttgagtggttagtgccggggttgctgcgcgaa
aagtgtattgcgctacttaaatcactgccgaaaagcattcgtcgtcaagtggtccccatt
cctgactgggtcgatgcggcgctggaaatgctcgtgcctgataaccgcccactgaccgag
gcgcttggcgagtttattcggcggcgaacgggtacgcgggtacacccagatgactggcgg
cttgacctgctagcaccacatttaatcatgaacgtgcgcgttgttgatcacgctggtaaa
acgctgggccaggggcgtgacgtacgtgccctggaaaggcgctttgaagaagccgccagc
aggggagctcaggcgttagcggagcaggctaatcaggctccggcgcttgaaggtctacct
attgagccgcttcccgagtctcgggtgacgactcaagcgggtattcgtgttgaggcctac
ccggcactggtagcagaagatgcacgcttcaaagtggcacttttcgatcatcccgccaag
gcagcggcagcgcatcaaatgggtgtggcgcgtttggcgatctcacaacagccggatcag
gtgaaagcgattaagcgtttgccgggggtggaaaaatgcgcgttgctgtttgcgaaggtt
gggagcaaaaatgagctggttgatgatcttttactggcggtgtttactcaagtagtggct
gcgcatcctctgccacgttcggagcaagcccttaagcagcgcttgcaaacgtctgaagaa
agcttgttagcgcatgcacaagcactgttaacgcaagttgaggcggcgctgaaagggcac
ttggcagtgaccaaaattttaaaagggaagctcaattttgcgttggcgcttgtttacagt
gatgtcagcgcgcagatgaagcgattggtttaccccggtttcattcgcgatgcaggagag
tggttaacggagtatcctcgttatacagaggctgcgttaatccggctggaaaaagccgcg
cgcgagcgagggcgcgaccaaatgctaatgcacgatgtccaagcattggaaacgcgtttt
gacgcgcgccgtaaaagtgagcgcagaggcgacgcggaagacccagagttagtggcattt
ggttggtggattcaggagctccgggtgtctctgtttgcccagcagctgggtactaaaatg
cccgtttctgtgaagcgcctagaaaagcgttgggaagagcttgttagcgtttaa
DBGET
integrated database retrieval system
