Halomonas sp. MS1: NF683_15510
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Entry
NF683_15510 CDS
T09972
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
hams
Halomonas sp. MS1
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hams03000
]
NF683_15510
Transcription factors [BR:
hams03000
]
Prokaryotic type
Helix-turn-helix
Other families
NF683_15510
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_23
Mg_chelatase
HTH_28
AAA_16
HTH_7
AAA_2
HTH_29
HTH_Tnp_ISL3
HTH_22
AAA
HTH_11
HTH_30
HTH_50
HTH_17
TrmB
HTH_26
HTH_38
HTH_1
HTH_IclR
IstB_IS21
Sigma70_r4_2
TetR_N
HTH_AraC
AAA_7
HTH_3
T2SSE
AAA_22
DUF815
DUF2089
Motif
Other DBs
NCBI-ProteinID:
UTD54549
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Position
complement(3378844..3380829)
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AA seq
661 aa
AA seq
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MLHSTLAPTRLQSEQRQHIEHIFQLGEGLDTPSLPAQAPIRRSWLRCLNEYQLDPTHPRP
ARVVPQQTLIEHRESVDELLHVARAGVDQLYGQIAQLGYVLLVTDHRGITVEFRGDPNQD
QQLRKAGLYLGADWDERFAGTCAVGTCLHDRQAIICHRQEHFDASHISLTCTAAPIADPQ
GNVMAVLDISALQSPTQHESQNFSLSLVTLYARMIEDAYFLQRYRDCLMVRLDTSREFVH
VNGRGLIAIEENGQVIAANAVGRELIAEHQHRWPPWSANHTPMLGELFECEIADILSINS
GTDDQLRAFRARASNTIHFISLLEPRRPRMAQRATPLTSELPAPLARLGADDPAMRKVQK
LADRLRNEANVNVLISGETGTGKEVVARALHESGNRAKQPFIAVNCAAIPESLIESELFG
YEPGAFTGGRSKGMRGLIPQAHGGTLFLDEIGDMPLALQTRLLRVLSEREVMPLGANTPV
KIDIRVITATHRHIEEMIQQGEFREDLYYRLNGAQLRLPALRERADKLFVIRRVFEDVAA
ERATQIAPRLRADAISALLAYSWPGNIRQLKNALAFALATSESDEITVHDLPEQCLSQRI
THSAAAQLETNANETLSDSLIHLLKQHHWNISAVARELGVSRPTVYRQMQRQGIVPPNWQ
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgctgcactccacgcttgcacctacacggcttcaatctgaacaacgtcaacatatcgag
catatttttcagctcggtgaagggctagatacccccagcttgcctgcgcaggcccccatt
cgtcgctcctggctgcgctgcctgaacgagtatcagctagaccccactcatccacgccca
gcacgggtagtgccgcagcaaacattgattgagcaccgcgagtctgttgatgaattactg
catgtcgcccgcgccggggtcgatcagctttatggtcaaatagcgcagcttggctacgta
ctactcgtcaccgaccaccgtggcattaccgttgagtttcgcggcgaccccaaccaggac
cagcaattacgcaaagcaggcctctacctgggggctgactgggatgaacgctttgcaggc
acctgcgctgtcggtacctgcttgcatgatcgccaggccattatctgccaccgtcaagaa
cacttcgatgcatcccatatctcgctgacctgcaccgccgctcctattgctgaccctcag
ggtaatgtgatggccgtgttagatatctccgcgctgcagtcgcctacccagcacgaaagc
cagaatttcagcctatcgctggtaacgctttatgcgcgcatgattgaggatgcctatttt
ctgcagcgctaccgcgactgccttatggtgcgtctagatacctcgcgggaatttgtgcac
gtcaacgggcgtggtttaatcgccattgaagagaatggacaggtcatcgctgccaacgct
gtaggccgcgagctaatcgccgaacaccagcaccgctggccaccttggtcggcaaatcac
acccctatgctgggtgaactgttcgagtgtgagatcgccgatatactcagtattaatagc
ggtactgatgatcaattgcgtgccttccgcgctcgcgccagcaacaccatccactttata
agtttgctggaaccccgccgcccccgcatggcgcaacgggcaacaccgcttacttctgaa
ctgccggcccccttagctcggctgggtgccgacgacccagcgatgcgcaaagtgcaaaaa
ctagccgaccgcttgcgcaatgaagctaacgtgaacgtactgattagcggcgaaaccggc
accggcaaagaggtggttgcacgggcgctgcacgaaagcggcaaccgcgccaaacaaccg
tttattgccgtcaactgtgcagccattcccgagtcactgattgaaagcgaactgtttggt
tacgaaccaggcgccttcaccggcggccgctcaaaagggatgcgcgggcttattccgcag
gcccatggaggcacgctgtttttagacgaaatcggggatatgccgttagcgctacaaacc
cgactgctgcgcgtgctgtccgaacgggaagtgatgccactgggggctaacacgccagtt
aaaatcgatattcgcgttattacggccacccatcgccatatcgaagaaatgatccagcaa
ggggaattccgcgaagacctctattaccggctcaacggtgctcagcttcgactgccagcg
ctacgcgaacgcgccgataaactgtttgttattcgccgcgtgtttgaagatgtcgccgcc
gaacgcgccacgcaaatagcgccgcgacttcgcgcagatgccatcagtgcgctactcgcg
tattcatggcccggtaatatccgtcagctcaaaaatgccctcgcctttgccctcgccacc
tcagaaagtgacgaaataaccgttcacgacctgccagagcagtgtcttagtcagcgtatt
actcacagcgcggcggcccaacttgaaacgaacgccaatgaaaccctttcagattcgctt
atccacctacttaagcaacatcactggaatatcagcgcggttgcccgtgagctaggcgtt
tcgcgtcccacggtataccggcaaatgcagcgccaggggattgtgccccccaactggcag
ggctga
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