Halomonas sp. MS1: NF683_16380
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Entry
NF683_16380 CDS
T09972
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF683_16380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hams03019
]
NF683_16380
Enzymes [BR:
hams01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NF683_16380
Messenger RNA biogenesis [BR:
hams03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF683_16380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
FANCF
Sacchrp_dh_NADP
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
UTD54715
LinkDB
All DBs
Position
complement(3558943..3560199)
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AA seq
418 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVTAYGKHLSLRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLHQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNDIQLLAQQLLNNPALIEVAPRNTTAEKIEQTIYRVDRDKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSDGEAVSLVCVDEHGLLSGIER
LIKQNLPKRIEPGFEPDPNAKPEPIENGCRGQKQPRAKRKPEGQAANTGGERRRRARR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtctgcacgacgatttactacgcgcggttaccgcgcagggc
tatacgcagcctacccctattcaacaaaaagctatacccgttgtacttgaaggtcgcgac
atgctcgccagtgcacaaactggcacaggcaaaaccgctggctttacgttgcccatgtta
cagcggttagcgaatggcaagcgccccggcaaacgccaagtacgcgcgttagtgctcacg
cctacgcgcgagcttgctgcccaggtaggcgaaagcgtaaccgcttacggcaagcacctc
tctttacgctcgcatattattttcggcggtgttggccaacagccacaagtggatgcactc
aaagcggggcttgatgtgttggtcgccacgccaggtcggctactagacttgcatcagcag
ggccacgtggatctatcggccgtagaaatcctggtgctcgacgaagctgatcgcatgctc
gacatgggattcatccatgatatcaagcgtctattgcgcttagtaccgaaacagcgtcaa
aacctgctgttctctgcaacattctccaacgacatacagttattggcgcaacagctgctc
aacaacccagcgttaatagaagtcgcacctcgcaacacgaccgctgaaaaaattgagcaa
accatttaccgagtagatcgtgataaaaaacgcgagctgctggcccatttaattcagcag
catggttggtttcaggtactcgttttcacacgcaccaaacatggcgcgaaccgcttagca
gagcagctctctaagcaagacatacccgccatggccatccatggcaataagagccaaggg
gctagaacacgtgcactaggtgctttcaaaagcggtgatttgcaggtacttgtcgccact
gacattgccgctcgcgggctagatatcaacgaacttccccatgtcgttaatttcgactta
cccaatgtggcagaggattatgttcaccgtattggacgcaccggccgagcgggcagcgat
ggcgaagcagtttcgctcgtatgtgtcgacgaacacggcttgctgagtgggattgagcgt
cttatcaagcaaaacctgcctaaacgtatcgaacccggttttgaacctgatccaaacgcc
aagcccgagccgattgaaaatggctgccgtggtcagaagcagccccgcgccaaacgtaaa
ccggaagggcaagcagctaatacaggcggtgaacgtcgtcgtcgcgcccgtcgctag
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