Halomonas sp. MS1: NF683_16810
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Entry
NF683_16810 CDS
T09972
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03030
DNA replication
hams03430
Mismatch repair
hams03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF683_16810
03430 Mismatch repair
NF683_16810
03440 Homologous recombination
NF683_16810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hams03032
]
NF683_16810
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_16810
Enzymes [BR:
hams01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF683_16810
DNA replication proteins [BR:
hams03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NF683_16810
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NF683_16810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
GIY-YIG
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UTD54793
LinkDB
All DBs
Position
complement(3653298..3654683)
Genome browser
AA seq
461 aa
AA seq
DB search
MSNTPLIFIDVETTGTRATRDRITEIAALKVVNDHITDRWVSLINPGTSVPSHISQLTGI
YDDMLIDAPSFKTIAHSLREWLGEDCLVAHNARFDASFLRNEFKRASITYQPHLLCTLRI
SRRLMPELPKHNLRTLLAHFNIPQVRQHRAEDDATALWQLWETWQQQYDAASWQAALADE
QRHRSLPAHLPSEQLTGLPASPGVYLFYGHNRLPLYVGKSINLRSRVLGHFQRDHQDDKE
MRLAQQIQHVEWEETAGDLSAQLREAQLVKELMPIMNRQLRRQGHLKTWYWPTDQPCPTL
VSGKAISQPQPGKLFGLFRSAKEAKDALRNIAETHQLCPQVLGIDKGTGRCFANQLGKCR
GACCGQEPLASHTQRAQEALASFQVKTWPWPGRIIIREKSRKNGPTSHHVVDHWCYLGSA
TTKQRALGLKGVAAKFDVDTYRILNRFLREPERHNLTVLPL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacacgccactgatatttattgatgttgagacaacgggcacccgtgcgacgcgt
gaccgcattaccgaaattgcggcattaaaggtagtcaatgatcacataacggatcgctgg
gtcagcctgattaatcctggcaccagcgtgccttctcacatcagccagctaaccggcatt
tatgatgacatgctgattgatgcgccctcttttaagaccattgcgcacagcttgcgcgaa
tggctcggtgaagactgccttgtagcccacaatgcacgctttgatgccagctttctgcgt
aacgagttcaagcgtgccagtattacctatcagccgcacctcctctgcacactgcgtatt
tcccgccgcttaatgcctgaactgcccaagcacaatctccgaaccttattggcgcatttc
aacattccacaagtccgccagcatcgggcagaggatgatgccactgcgctttggcagctg
tgggaaacctggcaacaacagtatgacgctgccagctggcaagccgctcttgccgatgag
cagcgccaccgaagcctgcccgcacatttacccagtgagcaactaaccgggcttcctgct
tcaccaggggtttatttgttttatggtcacaaccgccttcccttgtacgttggcaaaagc
attaatttacgcagccgcgtgcttggccatttccagcgcgaccaccaggacgacaaagag
atgcgccttgcccagcaaatacagcacgttgagtgggaagaaaccgctggcgatttaagc
gcccagctgagagaggctcaactggtcaaagaactgatgccgattatgaaccggcagtta
cgccgtcaggggcatttaaaaacgtggtattggccaaccgatcaaccttgcccaacactg
gtcagcggcaaagccatcagccagcctcagccgggaaagctctttgggctgtttcgaagt
gccaaagaagctaaagatgcgctgcgcaatattgccgaaacacatcagctttgcccgcaa
gtgctcggaatagataagggaacaggacggtgttttgctaatcagttaggcaagtgtcga
ggcgcttgctgtggacaggagccacttgcaagccacacgcagcgcgctcaagaagcacta
gcatcttttcaagtaaaaacatggccttggccggggcgaatcattattcgcgagaaaagc
cgtaaaaatggcccaactagccaccatgtggtcgatcactggtgctatttaggcagcgcc
acgaccaaacagcgtgccttggggctaaagggagtcgctgccaaatttgatgtggatacc
tatcgcatcctaaaccgctttttacgcgaaccagagcggcacaacctgacggtgctgcca
ctctag
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