Halomonas sp. MS1: NF683_17240
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Entry
NF683_17240 CDS
T09972
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
hams
Halomonas sp. MS1
Pathway
hams03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NF683_17240 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_17240 (uvrB)
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF683_17240 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NF683_17240 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
DUF87
UB2H
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
UTD54874
LinkDB
All DBs
Position
complement(3741005..3743029)
Genome browser
AA seq
674 aa
AA seq
DB search
MSKEFRLQSKFKPAGDQPAAIRSLISGLESGLAHQTLLGVTGSGKTFTMANVVQQQQRPT
IVMAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE
QMRLSATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFTRGELIDQRAFLRRLAELQ
YTRNDMDFRRGTYRVRGDVIDIFPADSDEEAVRVELFDNEVDSIRLFDPLTGEVRTHVPR
MTIYPKSHYVTPRETILGAIDAIKAELKERLDWMRKHERLVEAQRLEQRTLYDIEMMLEL
GYCNGIENYSRYLSGRAPGEPPPTFFDYLPDDALLFIDESHVSVPQVGGMYKGDRSRKET
LVEYGFRLPSALDNRPMKFEEWESISPQTIFVSATPGKYEAEHASQIVEQVVRPTGLLDP
EIEVRPASTQVDDLLSEIGLRTAVGERVLVTTLTKRMAEDLTEYFDEHGIRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNAHGKAILYGDKITDSMRKAIDETERRRAKQTAHNEEHGITPTTVTRSVADILEAAQ
APGKKSSRRRGSERKVAESAAEYDVATMSKHDLMAAISKLEDAMFEAAQNLEFEEAARLR
DQLHQMQEKQLALG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggaattccggctgcagtccaaattcaagcctgctggtgatcagcccgccgcg
atacgcagcctgattagtgggcttgagtcggggcttgcccatcagaccttattaggggtg
actggctcgggtaaaacgttcacgatggcaaatgttgtgcagcagcagcagcgcccaacg
attgtaatggcgcccaataaaacgctcgctgcccagctatatggtgagttcaaatcgttt
tttccggataacgctgtcgagtattttgtctcttactacgattattatcagccggaagcc
tatgtcccttcttcagatacctttattgagaaagatgcctccataaatgaccatatcgag
caaatgcgcttatctgctacgaaagcgctgctcgagcgccgtgatgcgcttatcgttgtc
tcggtatcggcaatctatggtctcggtgatccggatcagtatcttaagatgcgattgcac
ttcacccgtggtgagctaattgatcagcgtgcttttttacgccgcttggccgagttgcaa
tatacccgcaacgatatggattttcgtcgaggcacctaccgggtgcggggcgatgtgatc
gatattttccccgcggactctgacgaagaagcggtgcgggtggagttgtttgacaacgaa
gttgattctattcgcctatttgatccattaactggcgaggtgcgtacccatgtgcctcgc
atgaccatctatcctaaatctcactatgttactccgcgagaaactattttaggtgctatt
gatgcgatcaaggcagagcttaaggagcgtcttgactggatgcgtaagcacgagcgttta
gttgaagcgcagcgcttagaacaacgaaccctttacgatattgaaatgatgctagagctt
ggctactgcaacggcattgagaactactcgcgctacctttcaggccgcgcacctggcgag
ccacccccgacgttcttcgactatctgccggatgacgcgttactgtttattgatgagtct
catgtgagcgtaccccaggttggcggtatgtataagggcgaccgttctagaaaagagacc
ctggttgagtatggatttcggctaccctcagcgctagataaccgcccaatgaaatttgaa
gagtgggaatctatttcgccacaaaccatctttgtgtcggcaacgccaggcaagtatgaa
gcagaacatgccagtcaaattgtcgaacaggtagtgcgcccaacggggttgttagatcca
gaaatagaagtgcgccccgccagtacacaggttgatgacctgctctcagaaattggctta
cgtaccgccgtaggtgaacgtgttctggtgacgacgttgactaaacgcatggcggaagat
ttgaccgaatattttgatgagcacggtatccgtgtacgttatttacattcggatattgat
accgttgagcgggtagaaatcatccgcgacctgcgtcttggtaagttcgatgttttagtg
ggaattaacttacttcgagaaggcttagatattcctgaagtgtcgcttgttgccatcttg
gacgcggataaagagggctttttacgtgctgagcgctcactgattcaaaccattggccgt
gcagcccgtaacgcccatggtaaagctattctgtatggtgacaaaatcaccgactcaatg
cgcaaagccatcgatgaaaccgaacgtcgccgcgccaagcagaccgctcacaacgaagag
catggtatcacgccaactaccgtgacgcgctccgtggcggatattcttgaagccgcccag
gcaccaggcaagaagagcagccgtcgccgtggcagcgagcgcaaagtggcagagagtgct
gctgagtatgatgtggccacgatgagcaagcacgatctaatggcggctatcagcaagcta
gaggacgccatgtttgaagccgcgcagaacctggagtttgaagaggcggcgagacttcgt
gatcagcttcatcaaatgcaagaaaaacagctggcgctggggtaa
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