Halomonas sp. MS1: NF683_17930
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Entry
NF683_17930 CDS
T09972
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hams
Halomonas sp. MS1
Pathway
hams03030
DNA replication
hams03430
Mismatch repair
hams03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF683_17930
03430 Mismatch repair
NF683_17930
03440 Homologous recombination
NF683_17930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hams03032
]
NF683_17930
03400 DNA repair and recombination proteins [BR:
hams03400
]
NF683_17930
Enzymes [BR:
hams01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF683_17930
DNA replication proteins [BR:
hams03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NF683_17930
DNA repair and recombination proteins [BR:
hams03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NF683_17930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_4
Rv2179c-like
PAS
Motif
Other DBs
NCBI-ProteinID:
UTD55003
LinkDB
All DBs
Position
3861022..3863082
Genome browser
AA seq
686 aa
AA seq
DB search
MTRDGLPKRQRLIGLWLLLSGISLLGGAIFAAWLDAQLSPTGPTRIALWLGSFSGGATIF
LVGLLLERMLFTPLRHLQVQLARLVANPDARDEHPPEGWLKGLGPDLRRVRESWRIDRNQ
LATAHADGARSAAKIRRELETLLQVLETPLLLCDHHRRLMLFNQAAEDFFVDNTALGLGK
RLEALLPVASLQQALSQLPADGSPRELLAPCDNRWLKVVLRRVPGSDGETLLTFSDATAS
WSNEMGVRAELATKLPLLRQHTASLTSAADALIQLRHNGAENPALRHRFEQVIQEEGATL
GDNVGQIGQLLDDLQHQGERLTPMWSNDFWQALDERLDPAHRLITPVGMPAWFKGDAPAL
IVLFDSLVKHLNSHLPVSHFEGEICLGNKRVYLDLIWQGSPLPEHELAKWRRQPLPSLPL
NPLVSDVLRQHASDIWSLADDDAIHARLRLPLPAMERVGAPRETAPPRPEFHDFGIADLP
PPDEELANRTLRSLEVVAFDTETTGLELRRGDTVISLGACRVVNARLLASEVFDQKVDPK
RPIPPTSTAIHGLTDADVAGAPPLDIVLTRFRDYVGEAVLLAHNAAFDMLAITNKGVVFD
LPVIDTLLISRALDEALDGHDLDTLAQRYDLTFPPGTRHTALGDARVTAELWLALLPRLE
ARGVDTLEQLLALQANAFDRQDASAS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcgacgggctccctaaacgtcagcgactcattggcctatggctgctgctaagt
ggtatcagcttgctggggggcgctatttttgctgcgtggctggatgctcagctttcgcct
actggcccaacccgtatagcgctctggttgggcagtttttccggcggtgcgacgatattt
ttagttggcctgctactagaacgcatgcttttcacccctctacgccatttacaggttcag
ttggccagattagtggcaaacccagatgctcgtgatgaacacccaccagaaggctggctg
aaagggcttggccctgacctacgaagagtgcgcgagagttggcgcattgaccgcaatcaa
ttagccacggctcatgccgatggcgcacgaagcgccgcaaaaatacgtcgcgaattagaa
acgctgctgcaagtactcgaaacccccttattactatgtgaccaccaccgccgtttgatg
ctattcaaccaggccgcagaagatttctttgtcgataatacggcgttgggcttgggaaaa
cgcttagaagcgctactccccgttgccagcctacaacaagcgcttagccaacttcctgcg
gatggttcgccccgcgaactgcttgccccctgtgataaccgctggttaaaggtcgtgcta
cgtcgagttcctggcagtgatggagaaacactactaacgtttagcgatgcaaccgcttcc
tggtcaaatgaaatgggtgttagagcagaactcgccaccaagctccccctcctacgccaa
cacacagcaagcctgaccagtgcagcggatgcactgatacaactgcgccataacggcgca
gagaacccagcgttacgtcatcggttcgagcaggtaatccaagaggaaggagcgaccctg
ggtgataatgttggtcaaatcggacagttattggatgatttgcaacatcaaggcgagcgc
ttaacccctatgtggtcgaatgacttctggcaagccctggatgaacgcttagatccagcg
catcggctcatcacccccgtcggcatgcctgcctggtttaaaggcgacgcaccggcactg
attgttctgtttgattccttagtcaagcatcttaactctcacctgccggttagccatttt
gaaggtgagatatgccttggcaacaagcgggtttatttggacttaatttggcaaggcagc
cccttaccagagcatgagctagcgaaatggcgtcgccagcccctgccatcgctaccactt
aatccgctggtgtcagacgtactgcgccagcatgcgagcgatatttggagccttgctgac
gatgatgctattcatgcgcgcctgcgcctgccgctaccagccatggagcgcgttggggca
ccccgtgaaaccgcacctccgcgaccagagttccatgatttcggcatcgctgacctgccg
ccacccgatgaggagttggcgaaccgcacattacgtagcctagaagtggttgcgtttgat
actgaaaccactggccttgagctacgccgaggggatacggtgattagcctgggggcttgt
cgggtggtcaatgcgcggctattggccagcgaggtctttgatcaaaaagtcgatccgaaa
cgtccaatcccccctaccagtacagcaatacacggattgacagatgctgatgtggccggt
gcaccgccccttgatattgtcctaacgcgcttccgagattacgtcggtgaagcggtttta
ttagcgcataatgccgcgtttgatatgctcgccattactaacaaaggggttgtctttgat
ttgcctgtcatcgataccttattaatctcaagagcattagacgaagcgttagatgggcat
gatttagatacgttggcacaacgctacgacctgacgttcccaccaggcactcgccacacg
gcgcttggtgacgcccgtgtaaccgctgaattatggctagcgttgttaccccggcttgaa
gcacgtggcgtggatacgttagagcagctgttggcgctgcaggccaacgcgtttgatcgc
caggatgccagcgcctcatga
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