Halobacillus amylolyticus: MUO15_13215
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Entry
MUO15_13215 CDS
T09510
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hamy
Halobacillus amylolyticus
Pathway
hamy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hamy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MUO15_13215 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hamy03021
]
MUO15_13215 (rpoC)
03400 DNA repair and recombination proteins [BR:
hamy03400
]
MUO15_13215 (rpoC)
Enzymes [BR:
hamy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MUO15_13215 (rpoC)
Transcription machinery [BR:
hamy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MUO15_13215 (rpoC)
DNA repair and recombination proteins [BR:
hamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MUO15_13215 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UOR10616
UniProt:
A0ABY4H6V9
LinkDB
All DBs
Position
complement(2548640..2552245)
Genome browser
AA seq
1201 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDPGETALDKKQLLSEKEYRSYREKFGQGFQAAMGAEAIRKLLF
DIDLNGEVDTLKEELKTAQGQRRTRAIKRLEVLESFRNSGNDPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPTIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVSRGLAHNIKSAKRKIERIHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERANAVGEGMVFKDLNEAIMSYQNGYTHLHTRVAVQ
ASSLKNETFTEKQQQQLLLTTVGKLIFNEMLPTSFPYMNEPTQENLEVKTSDRFFVEKGT
DIKKEIASREEVLPFKKGILGDIIAEVFKRFSISETSKMLDRMKDLGFAYSTKAGITVGV
SDVVVLPEKQEILEEAQAKVDKVLKQFRRGLITEEERYDRVIEIWSACKDDIQDRLMQSL
NPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLPVSSLREGTETIEPLI
DRLIGRTAFQKVKHPETGEVLAQRNEVIFEDAAKQIVDSGVEKVVIRSAFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARNPKGQAVISEIAGTVQEINEVKEKQEIVVQGSVETRSYTAPYGSRLRVTEGDEVEAG
EALTEGSIDPKELLSVQGLDGVQEYLLKEVQKVYRMQGVEISDKHVEVMVRQMLRKVRVL
DSGDTDVLPGSLLEIHQFKEANQRVLMEGGQPAVGRPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMTRYRKIQAQSEAKEETETVEEVTQ
P
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataactttgagtatatgaaaattggtttggcttcgccggacaagatc
cgctcttggtcctatggtgaggttaagaaaccagaaacaattaactatcgtacgttgaag
cctgagaaggacggcttattctgtgaacgaattttcgggccgcagaaagactgggaatgc
cactgtggaaaatacaagcgcgtacgttacaagggcgttgtttgcgaccgctgcggtgtt
gaagtaactaaagcgaaagtgcgtcgtgagcgtatgggacacttagagttagctgcccct
gtttcacacatttggtatttcaaaggtattccaagccgtatgggacttgttcttgacatg
tcaccacgtgcactggaagaagtcatctattttgcagcatatattgtaacggatccaggt
gaaacagcgttagacaagaaacagctgctttctgagaaagaatatcgttcgtaccgtgaa
aagtttgggcaaggattccaagccgccatgggggcagaagcgattcgtaagcttctattt
gatattgatcttaatggtgaagtagatacactgaaagaagagcttaaaacagctcaaggg
cagcgtcgtacccgggcgattaagcgtcttgaagtgctagagtccttccgtaactcagga
aatgacccatcgtggatgatcttagacgtgcttccggttataccacctgagttacgtccg
atggtccagcttgatggtggtcgttttgctacgtccgaccttaacgacctttatcgtcgg
gtaatcaaccgtaacaaccgcctgaagcgtctgttagatcttggagcaccaacgattatc
gtacagaacgagaagcgtatgctgcaagaagccgtcgatgctctcatcgataacggtcgc
cgtggtcgtccggttactggtccagggaatcgcccgcttaaatccctttctcacatgctt
aaagggaagcaaggtcgtttccgccaaaacttactgggtaaacgtgttgactattcagga
cgttctgtaatcgttgtaggaccaagcctgaaaatgtaccaatgtggcctgccgaaagaa
atggctcttgagctgtttaaaccgtttgttatgaaagagcttgtttcacgcggtctagcc
cacaatattaaatcagctaaacgtaagattgaacgtatacaccctgaagtatgggacgtt
cttgaagacgttataaaagaacaccctgtcttactgaaccgtgcaccaacattgcaccgt
ctcggaattcaggcattcgaaccaacacttgtagaaggtcgtgcaatccgccttcacccg
cttgtatgtacagcttataatgctgactttgatggtgaccaaatggctgttcacgtacca
ttgtcttctgaagcacaagcagaggctcgcattttaatgctagctgctcaaaacatcctt
aaccctaaagatgggaagccagttgttacaccttcacaggatatggtgctagggaactat
taccttactcttgaacgtgctaatgctgttggtgaagggatggtctttaaagatctgaac
gaagccatcatgtcctatcaaaatgggtacacacatttgcatacacgtgtagctgttcaa
gccagctcattaaaaaatgaaacgtttactgaaaagcagcaacaacaattattgctcact
acagttgggaagttgatctttaacgaaatgcttccgacctcattcccttatatgaatgaa
cctactcaggagaatctggaggtaaaaacatcggatcgcttctttgttgaaaaaggaacg
gacattaagaaagagatcgctagtcgcgaggaagttcttccattcaagaaagggattctc
ggagatattatcgcagaggtatttaaacgcttctctatcagtgaaacatctaaaatgctt
gaccgcatgaaggatcttggttttgcttactctacaaaagctggtattaccgtcggtgta
tctgacgtcgttgtacttcccgagaaacaagaaattctggaggaagcacaagctaaagta
gataaagtactcaaacagttccgtcgtggtctcattacagaagaagagcgctatgatcgc
gtcattgaaatatggtcagcgtgtaaagatgatattcaagaccgcctgatgcagtcattg
aatccgcgtaacccaatctttatgatgagtgactccggagctcgtggtaacgcatcaaac
ttcactcagcttgccggtatgcgtggcttgatggccaacccggctggccgaatcattgaa
ctgccgattaaatcaagcttccgtgaaggattaacagtacttgaatacttcatctctacc
cacggtgcacgtaaaggccttgccgatacagcactgaaaacagctgactcgggttacttg
actcgtcgacttgttgacgtggctcaagatgttatcgttcgtgaagatgattgcggaact
gaccgtggtctccctgtaagttctctgagagaaggaacggaaacgatcgagccattgatc
gatcgtctaatcggacggacagctttccaaaaagttaagcaccctgaaactggcgaagta
cttgcccaacgtaatgaggtaatcttcgaagatgccgcgaaacaaatcgttgactcaggt
gttgaaaaagtagtgattcgttcagcgtttacttgtaatacgaaacacggcgtatgtaaa
aaatgctacggacgtaaccttgcgacaggtgacgaagtcgaagttggagaagcagtgggt
atcattgctgcacaatccatcggtgaaccaggtacacagcttacaatgcgtaccttccac
acaggcggtgtagcaggggatgacattacgcaaggtcttccgcgtatccaagagattgta
gaagcacgtaatccaaaaggtcaggctgttataagtgaaattgcgggtaccgttcaagaa
atcaacgaagtgaaagaaaaacaagaaatcgttgttcaaggatctgtagaaacccgttcc
tatacagcaccatatggctctagactaagagttactgaaggtgacgaagtcgaagccggt
gaagcactgactgagggttccattgatccgaaagagctgttgagtgttcaaggattagac
ggtgtacaagaataccttcttaaagaagttcaaaaggtatatcgtatgcaaggggttgag
atctccgataagcacgtagaagttatggttcgccaaatgctgcgtaaagttagagtgctt
gactctggggacacggatgtactgcctggatcacttcttgagattcaccaattcaaggaa
gcgaaccagagagttcttatggaaggtggccagccggctgtcggccgtccagttattctt
ggtattaccaaagcatcacttgaaacagacagcttcttatctgcagcgtccttccaggaa
acaactcgtgtcctgacagatgcggcgatcaaaggtaagcgtgatgaattactcggactg
aaggagaacgttattattggtaaactggttccagccggtacgggtatgacgagataccgc
aagattcaggcacagtctgaagctaaagaagaaactgaaacagttgaagaagtaacacag
ccataa
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integrated database retrieval system
