Halobacillus amylolyticus: MUO15_15065
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Entry
MUO15_15065 CDS
T09510
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hamy
Halobacillus amylolyticus
Pathway
hamy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUO15_15065 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hamy03400
]
MUO15_15065 (ligD)
Enzymes [BR:
hamy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUO15_15065 (ligD)
DNA repair and recombination proteins [BR:
hamy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUO15_15065 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UOR10917
LinkDB
All DBs
Position
complement(2925909..2927681)
Genome browser
AA seq
590 aa
AA seq
DB search
MDKPMLPTLSEDLPEGDEWIYEVKYDGYRAFLKWTEKGIKLISRNGQDLSDRFPELIEAE
QEAASPDQFPLVLDGEIVILNTPYQANFPLLQKRGRMSNKTTIQHRAEQRPATFMAFDLL
EHGGILTSSAYTKRKQQLKKIIDTIDFLRIQFVETFDDAAVIRQLLHLHLGEGIVAKQKK
SPYQIGRTRQWLKHKQWRTVSGFLTSFDPQNEYYKVEIWHEGKRVPLGIFKHGLKPDQAK
TLQNFFKEKGTNWNLAPSVCAAIHCLMAKDGEMREPLFDRFRFDLEPGDCTVANRDWDLL
LFPSNVEITHPDKILWPDMQFSKRDYLMYIRAVAPYMIPFIKGKKLTLIRYPHGVGDKSF
FQKHRSDHAPDYVESWEEEDETFMISNGLSSLVWLSNQGALEFHIPFQKAGANNPDEIVF
DLDPPDREEFYLAVTAAQLLKHLLDKLEVHCFVKTSGNKGMQIHIPIQEGSMTYDETRGF
TKSLVDLLIKESPDLFTIERLKKKRGQRLYLDYIQHAEGKTIVSPYSARANSKGTVAAPV
FWNEVTEHLNPENFTIKNVVKRVQEFGCPFQQYDRVRSIQPIDVMKQLGG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggataaaccaatgcttccaacattgtctgaggatttaccggagggtgacgaatggata
tatgaagtgaaatatgacggttatcgggcttttcttaaatggaccgaaaaagggatcaag
cttataagtagaaacggacaggatttatctgatcgatttccagagctcattgaagcggaa
caagaagccgcttcaccagatcaatttccacttgttcttgatggggagatcgttattctt
aataccccctatcaagcaaacttccctcttttacagaaaagaggccgcatgagtaacaaa
acaaccattcaacaccgtgccgaacagcggccagctacattcatggctttcgaccttcta
gaacatggtggaattttaacttcttctgcgtacaccaaacgaaaacaacagctaaaaaaa
atcatcgacaccattgatttcctaagaattcaatttgtagagacctttgatgatgcagcc
gtgattcgccaacttcttcatctccatttaggtgaaggaattgttgcgaaacaaaagaag
agcccataccaaattggacgtacgagacaatggctaaagcataaacaatggcgcacagta
tcaggttttttaacctcatttgacccccaaaacgaatattacaaggtggaaatctggcat
gagggtaaacgggtcccattaggcatctttaagcatggattaaaaccagaccaagcgaag
acgctacagaactttttcaaagaaaaggggacgaactggaaccttgctcccagtgtttgt
gcagcgatccattgtctaatggcgaaagatggtgaaatgcgtgagccgctatttgatcgg
ttccgctttgatttagagcctggtgattgtacagttgctaatcgggactgggatctgctt
ttgtttcctagcaacgtagagattactcacccggataaaatcttatggcctgacatgcag
tttagcaagcgtgattaccttatgtatatcagggctgttgcaccctatatgattccgttt
ataaaagggaaaaagctgacattaatccgctatcctcatggagtcggggataaatccttt
tttcaaaaacaccgctctgaccatgcacctgactatgtagaaagctgggaggaagaagac
gaaaccttcatgataagtaatggtctctcaagcctggtttggctaagcaatcaaggagca
cttgaatttcatatacccttccaaaaggccggtgcaaataatccagatgagattgtcttt
gaccttgatccgcctgatcgtgaagagttttatcttgctgttacagctgcacaactattg
aaacatttacttgacaagcttgaggtgcattgctttgttaaaacctctggcaacaaaggc
atgcagatccatattccaattcaagaaggaagcatgacatatgatgaaacaagagggttt
acgaagagtttagtcgacctgcttataaaggaaagcccagacctgtttacaattgaacga
ttaaagaagaagcgagggcaacggctttatcttgattatattcagcatgctgagggcaaa
actattgtttcaccttactcggcgcgggccaattcgaaaggaacggtagctgcccctgtc
ttttggaatgaagttaccgagcatttaaaccccgaaaacttcactattaaaaatgttgta
aagcgagtccaggaatttggctgcccttttcaacaatatgaccgagtgcggagcatacaa
ccaattgatgtaatgaagcaattgggagggtaa
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