Halomonas sp. M1: P8S55_00555
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Entry
P8S55_00555 CDS
T10932
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hamz Halomonas sp. M1
Pathway
hamz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8S55_00555 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hamz03021
]
P8S55_00555 (rho)
03019 Messenger RNA biogenesis [BR:
hamz03019
]
P8S55_00555 (rho)
Transcription machinery [BR:
hamz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
P8S55_00555 (rho)
Messenger RNA biogenesis [BR:
hamz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P8S55_00555 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
ABC_tran
AAA
AAA_22
AAA_25
NACHT
AAA_19
AAA_16
nSTAND_NTPase5
ATPase_2
AAA_30
NPHP3_N
AAA_24
cobW
Rad17
ResIII
nSTAND3
NB-ARC
Spore_III_AA
Viral_helicase1
NTPase_1
AAA_18
AAA_17
AAA_23
AAA_33
RNA_helicase
AAA_5
Mor
Motif
Other DBs
NCBI-ProteinID:
WFE71599
LinkDB
All DBs
Position
127159..128115
Genome browser
AA seq
318 aa
AA seq
DB search
MTRKTLSLKTKRPTEPKPINEVEEQLSNDPITRFLNGTAIHPSPRLYLAPSDQPRTVRAM
DLITPIGMGQRGLIVAPPGSGKTTLLKHICQAVAEAYPEIKLYALLIDERPEEVTDFKRS
VSAEVHASSSDESYANHVRMADQLLDTARKQAGEGQDVMIVIDSLTRLSRVHNAEQRGNG
RTMSGGLDSRAMEIPRKLFGAARKIENGGSLTILATVLVDTGSRMDQVIFEEFKGTGNME
LVLSRDVANQRIFPAIDIAKSSTRREELLMDAKELEKARTLRRALTPLKPIEGAQKFLAL
LEKYPTNAALLDAFSPAE
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcaaaactctaagcctaaaaaccaaaaggccaacagagccaaaacccattaac
gaagtcgaagaacaactctccaacgaccccataacacgcttcctcaacggcaccgccatc
catccctccccacgcctgtatctagcgcccagtgatcagccgcgcaccgtgcgggcgatg
gatttgattacgcccatcgggatggggcagcgggggttgattgtggcaccgccgggttct
ggcaaaacgacgctgttaaagcatatctgccaagcggtggcggaggcttacccggagata
aagctgtatgccttgctgatcgatgagcgcccggaagaggtcaccgattttaagcgcagc
gtgtcggcagaggtgcatgcctcgtcgtccgatgaaagctacgcgaaccatgtgcggatg
gccgatcaattgctggacacggcgcgtaagcaggcaggcgaggggcaggatgtgatgatc
gtgatcgattcactcacaaggctttcgcgggttcacaatgccgagcagcggggcaatggg
cgcacgatgtcgggtggtctagattcccgggcgatggaaatccctcgcaaactgtttggc
gcggcgcgaaaaatcgaaaatggcggctcgctgaccattctggccaccgtgctggtggat
acgggaagccgtatggatcaggtgattttcgaggagttcaaaggcacgggcaatatggag
ctagtgctatcacgggacgtggctaatcaacggattttcccggcgatcgatattgccaaa
agcagtacccgtcgcgaagagctgttgatggatgcaaaagagcttgaaaaagcacgcacc
ttgcgcagagcgttaacaccgcttaagcccatagaaggcgcgcagaagtttcttgcgctg
ttggagaaataccccacgaatgcggcgctgttggatgccttttcaccggctgagtag
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