Halomonas sp. M1: P8S55_00820
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Entry
P8S55_00820 CDS
T10932
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hamz Halomonas sp. M1
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hamz03032
]
P8S55_00820 (topA)
03400 DNA repair and recombination proteins [BR:
hamz03400
]
P8S55_00820 (topA)
Enzymes [BR:
hamz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
P8S55_00820 (topA)
DNA replication proteins [BR:
hamz03032
]
Prokaryotic type
DNA Topoisomerases
P8S55_00820 (topA)
DNA repair and recombination proteins [BR:
hamz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P8S55_00820 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WFE71652
UniProt:
A0AAX3S8B9
LinkDB
All DBs
Position
185780..188407
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AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSVEEKAEYKKRKAQDQLIRRMGIDPGNGWEAHYEVLPGKEKVVAELKKLAEKADAVYL
ATDLDREGEAIAWHLRETIGGDESRYKRVVFNEITKNAIQDAFKAPGVLNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHADLVS
PDGELVRFALARQDGKAFRPTSQKDTLDRIEKLRKAKLAITSREDKPTSSKPTAPFITST
LQQAASGRLGFSVKKTMTMAQRLYEAGYITYMRTDSTNLSKDAVEGVRAFIGDEYGERYL
PEAPNRYSSKESAQEAHEAIRPSSVERKASDLAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLSVEVEGYDLRAKGRVLKFDGYTRVMKPSGKNEDQSLPDLPKGTPMGLEKLDPQQH
FTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDIVTER
LKESFPDLMDYSFTARMEDSLDEVAEGERNWQALLDAFYEEFRGELSKAESEDGMRPNQP
VPTEIDCPSCGRKMQIRTASTGVFLGCSGYNLPPKERCKTTIDLIPGEEAVAEDAGEEAE
TNALRAKHRCEKCGTAMDNYLIDETRKLHICGNSPDCDGYDIETGKFKIKGYDGPIIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEVAPPKMDPIPMPELACQKVDDHYVL
RDGASGLFLAASKFPKNRETRPPLVEELKSHAEELPEKYHFILKAPSKDPDRRPAQIRFS
RKNKEQFVMTDEEGKATGWKATYEAGKWHVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcactggtcatcgtcgaatcgccagcgaaagcgaagacgataaataagtac
ctcggcaacgatttcatcgtcaagtcgagcgtgggtcatatacgtgacctaccgaccagc
ggctcaggtaaggcagcctccgatcccaaggagcgcgctcgccaggccgcggcaacgcgt
aagatgtccgtggaagagaaggcagagtataagaagcgcaaggcccaggaccaactgata
cggcgtatgggtatcgatcctggtaatggatgggaagcccactacgaagtgttacccggt
aaagagaaagtggttgccgagctaaaaaaattagccgaaaaggctgatgctgtttatctc
gcaacggatttggaccgcgaaggtgaagccattgcctggcacctgcgcgagaccatcggt
ggtgatgaaagccgttacaagcgcgttgtatttaacgagattaccaagaacgctatccag
gatgcgtttaaggcacctggggtgctcaatattccacgggttgaggctcagcaggcgcgc
cgcttcctggatcgcgtcgtaggcttcatgctctcgccattgctgtgggccaaaattgcc
cgtggcctttcggccggtcgcgtacaatcagtcgccgttcgcctgatcgtggagcgtgag
cgtgaaattcgtgccttcattcctgaagagttttgggatgtgcatgccgatctggtttcg
ccggacggtgagctggtgcggtttgcgttggcgcgtcaggatggcaaggcatttcgacca
acctcgcagaaagacacccttgatcgcattgagaaactgcgcaaggcgaagcttgccatc
acctcccgtgaagataagcccacgagctccaagcccacggcgccgttcatcacttcgacg
cttcagcaagccgctagtggtcggttagggttttcagttaaaaagaccatgaccatggct
cagcgcctttacgaggcgggctacatcacctatatgcgcacggactccacaaatctctcc
aaagatgcggtggagggggtgcgggcttttattggcgatgagtacggtgagcgctacttg
ccggaagcgcctaaccgttacagtagtaaagagagcgcccaagaggcccacgaggcgatc
cggccttctagcgttgaacgtaaagcgtctgacttagcgggaatggaacgcgacgctgag
cgtctttacgaacttatttggcgccagtttgtggcgtgtcaaatgaccccggctgagtac
ctatctagcacgctaagtgttgaagtagaaggttacgatctgcgtgccaaagggcgtgtg
cttaagtttgatggctatacccgagttatgaagcccagtggtaaaaacgaagatcaaagc
ctgccagatttgcccaaaggcacgcccatgggccttgaaaagcttgaccctcagcagcat
tttactaagcctgccccgcgttatacggaagcaagtttggtaaaagagttggagaaacag
gggattggccggccttctacctatgcatctattatttccacgattcaggatcgtggttat
gtgaagctagaaaatcgtcgtttttatgctgaaaaactgggcgatatcgttaccgagcgt
ttgaaagagtccttccctgatttgatggattactcttttacggcgcgtatggaagatagc
ctagatgaggtggctgaaggtgagcgtaactggcaagcgttgctagatgctttttacgaa
gagtttcgtggagagttaagcaaagctgaaagcgaagatggtatgcgccccaaccagccg
gtgcctacagagatcgactgcccgagctgtggtcgtaaaatgcagatccgcacggcatca
accggggtgttccttggctgtagtggctacaacttgcctcctaaagagcgctgtaaaacg
actattgatctgatcccgggtgaagaggcagttgccgaagatgccggtgaagaagcagaa
accaatgccctgcgtgccaaacatcgttgcgagaagtgtggcacggcaatggataactac
ctaattgatgaaacccgtaaactgcatatttgtggtaacagtcccgattgcgatgggtac
gatattgagacaggtaagttcaagataaaagggtatgacgggcccatcattgagtgcgat
aaatgcggctcggaaatgcagctgaagtctgggcgttttggtaagtacttcggctgtaca
aatagcgagtgtaaaaacacacgtaagttgctgaaaagtggtgaagtggcgccgcctaag
atggatccaattccaatgccagagctggcctgtcaaaaagtggatgaccactacgtactg
cgtgacggcgccagtggcttattccttgcggctagcaagtttcctaaaaaccgggaaacg
cgcccgcccttggtggaggagttaaagtcccacgccgaggaactgccggagaagtaccac
tttattctcaaggcgcctagtaaagatccagacagacgcccagcgcaaatccgtttctcg
cgtaaaaataaagagcagtttgtgatgactgacgaggaaggaaaggcgactggctggaaa
gcgacctatgaagccggtaaatggcacgtggaggacaagcgtaagtga
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