Halomonas sp. M1: P8S55_03560
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Entry
P8S55_03560 CDS
T10932
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hamz Halomonas sp. M1
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hamz03009
]
P8S55_03560 (rlmD)
Enzymes [BR:
hamz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
P8S55_03560 (rlmD)
Ribosome biogenesis [BR:
hamz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
P8S55_03560 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_25
TRAM
Cons_hypoth95
Methyltransf_31
Methyltransf_11
Methyltr_RsmB-F
RrnaAD
MTS
Methyltransf_15
DNA_methylase
SAM_MT
DREV
Motif
Other DBs
NCBI-ProteinID:
WFE72172
UniProt:
A0AAX3S8G9
LinkDB
All DBs
Position
complement(794225..795661)
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AA seq
478 aa
AA seq
DB search
MAMLGKRRPPRPASGHSGLARTPSGKAPQPSDAVKSDASAPLVIERLAHDGRGVAHNAAG
KTVFVSQALPGEQVVVGVHVTRKRFDEAHIKTQLTTSAQRVVPPCPHFGQCGGCDLQHLD
INAQRAHKREVVTELMARQGITLESIAAINGSHESYRRRARLGVKVDGSGSVLLGFRAPH
SHRLVDIQQCHVLVPQLQALIGPLRQLLATLEAPRQVGHIELVATEDTTLLLVRQLKEHA
QDNARWQRFADQQQVSLGAWLGREGPSLHWYGAAPQLIDTLTPTASESDLGNAQAKSALN
LQFAPGDFLQVNAEVNQKMVAQVAEWLSPVQGQRVADLFAGIGNFSLPLAAAGAKVHAVE
GNPAMVERIAANARLNQLAVTVQQADLSDVKTVHALLSEQSIEALVLDPPRSGAEAICQA
LGRYKVPKVAYVSCDPATLARDAAHLVHAGYRVKQVAVADMFLHTAHMETLMLFEYGG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgttgggaaagcggcggcccccccgccccgcctcagggcactcgggcttggcg
cgtacgcctagcggtaaagcaccgcaaccgagcgatgccgtaaaaagtgatgcctccgca
ccgctggtcattgagcgtttagcccatgacgggcgtggtgtcgcccataacgcagcgggt
aaaaccgtatttgttagccaggcgctgcccggtgagcaagtagtggtaggggtgcacgtg
acgcgcaaacgttttgatgaagcgcatatcaaaacgcagctcactacctctgcgcaacgt
gtggtgccgccgtgcccccattttggtcagtgcggtggctgcgatctgcagcatttagat
atcaacgcgcagcgtgcccataagcgcgaagtagtaaccgaattaatggcccgacagggc
attacgcttgagtccatcgccgcgattaacggtagccatgaaagctatcggcggcgggca
cggctgggggttaaagtcgacgggagtggcagcgtgctgcttggctttcgtgcgccccat
agccaccgcttggtggatattcagcagtgccatgtgctggtgccgcagttgcaggcgcta
atagggcctttacggcagctgctagccacgttagaagcgccgcgccaagtgggccatatt
gagcttgtcgccacggaagataccacgctactcctggttcgccagttaaaggagcacgct
caagataacgcccgctggcagcgttttgctgatcagcagcaggtaagtttaggtgcatgg
ttagggcgcgaaggcccatcactgcactggtatggtgcagcaccgcaattgatagatacg
ctaacgcccactgcatcagagagcgacttgggcaatgcccaggcaaaatctgctctaaac
ttacagtttgcgcccggtgatttccttcaggtcaacgcggaggtcaatcaaaaaatggtg
gcccaggtggctgaatggctctctccagtccaggggcagcgggtcgctgatctgtttgcg
ggaataggcaactttagccttcctttagcagcggcaggggccaaggtgcatgccgtggag
ggtaatcccgcgatggttgagcgcatcgccgccaatgctcgtctaaatcagcttgccgtt
actgtccaacaggcagatttaagcgacgtaaaaacggtacatgccttattaagtgagcag
tcaatagaggcgctggtgcttgatccgccgcgtagtggggcagaagcgatttgccaagcc
ttaggccgatacaaagtgcccaaagtggcttacgtttcctgcgatccggcaaccctagcc
cgggatgcggcacaccttgtgcatgcaggttaccgcgtcaagcaagtagcggtagcagat
atgttcctgcacactgctcatatggaaacgctgatgctgtttgaatacgggggctag
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