Halomonas sp. M1: P8S55_03825
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Entry
P8S55_03825 CDS
T10932
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hamz Halomonas sp. M1
Pathway
hamz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8S55_03825 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamz03019
]
P8S55_03825 (rne)
03009 Ribosome biogenesis [BR:
hamz03009
]
P8S55_03825 (rne)
Enzymes [BR:
hamz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P8S55_03825 (rne)
Messenger RNA biogenesis [BR:
hamz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P8S55_03825 (rne)
Ribosome biogenesis [BR:
hamz03009
]
Prokaryotic type
rRNA processing factors
P8S55_03825 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WFE72223
UniProt:
A0AAX3SBX2
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All DBs
Position
848184..851438
Genome browser
AA seq
1084 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSSEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHEEALG
FIRQVMPSYQQKIKLYVDEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPDMDTPHY
DVQRFRDDHLDEDDSQALSSFEISTDTDVGKEPDPSFTPPTQRAEAAVKSVTHNAPAPVS
LQTEEAPAKVTAAATPTPAPAADEQPSVIGRFIRGFAKLLGGEDSSTQQPAAEAPAPRKS
AERSAPKSTRSTDNKPRQTPESSESAGKSEQRSNTQSRSTPAGDDANDKRSGPNRTRNRR
RHPQNEDSKPQDSSNKSSRQSAKEPSGNSTDAQHEAASAQPESRRDTQRDQAREQKSRDS
KPRDSKPRDEKAKSDEPRNAADCEEKQESKQPPAPQDDGTPKRTRNNPRNRSRKQAINPQ
SEAEQQKLQAEAALKAVATVEDTTQAVPSTESQPTASATQETSPAAPVDSTSSQAAQASD
VENGEETTAEQPAKPAEKARKATHQRRKPQAEQPAQETAAGDESQPIANESASDTAKAEL
EETPKPAAPQEAEESQPAEAPEQPKTAPVADSEPKPAEAAQEPEPTDTQQNEAAAEDVKA
SETGSEERATETAAIAEPIADEAKVNEANADKVAATQASAPTTTPVENAAAAEASVPEKS
APVASPQSDTPQPEEAPVAEQKEAENASTAAKEETPKPSRRRRSRAHNDPRELRKQQAQN
AGQE
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgcaacccagccagaagagctgcgggttgcgctggtagat
ggacaacgcctttacgacctggatatcgaatcaggcgctcgggaacagaaaaaagccaac
atatatcgtggcaaaatcacccgtgtcgaaccctcccttgaagccgcgtttgtcgacttt
ggcgccgagcgccacggctttttgccgttaaaagagatctcccgcgagtactttattaaa
gatgtctctggccgccccagcattaaagaagtgcttaaagagggccaggaagtcatcgtt
caggtggacaaagaggagcgcggcaacaaaggcgccgctctgacaacgttcatcagctta
gcgggtcgttttttagtactgatgcctaataacccacgtgcgggggggatttctcgccgc
attgagggtgatgaccgcagccagctaaaagacgccatgggccagctcactgtgcccgac
aagatgggtctgatcgtgcgcaccgctggcattggccgcagctcagaagagctgcagtgg
gacctggactacctagtgcaggtttgggagtccatcaccactgaagcgggcaaacgctca
gcgcctttcctgatttaccgtgaatccaatgtcattattcgcgccatgcgcgactatctt
cgccaagatattggtgaagtactcatcgatagccctgaaattcacgaggaagccctgggc
tttatccgtcaggtaatgccctcttatcagcagaaaatcaaactatacgtagatgaagtt
ccgctgttttcacgcttccagattgagtcgcagatagaaaccgcctaccagcgggaagtt
aaactgccctctggtggttctattgttatcgaccacactgaagcgctggtctccatcgat
atcaactccgctcgcgccacccgcggtagcgatatcgaagaaaccgccttacaaaccaac
tccgaagccgctgacgagatcgcccgccagctgcgtttgcgggatattggcggccttgtc
gttatcgactttatcgacatgggccctgcgcgcaaccagcgggaagtggaaaaccgcatg
cgcgacgcgctgaaactggaccgagcacgtgtgcagattggccgcatttcgcgctttggc
ctaatggaaatgtcgcgccagcggttgcgcccctccttaggcgaaaccagcggcgtggtt
tgcccgcgctgtaacggtcaaggcacgatacgcgacgttcgctctctgtcactctctatc
atgcgcctgattgaagaagaagccatgaaagagcgcagcgcacagatccgcgccattttg
ccggtacccgtggccacctacctgctcaacgaaaaacgcagcgtgctggctgatatcgag
tcccgccagggtgtgcgcgtagtgctactaccgaatcctgacatggacacgccccattac
gatgttcagcggttccgcgatgaccatctcgatgaagacgacagccaggcgctttccagc
tttgaaatttccaccgacactgacgttggcaaagagcccgacccaagcttcacgccaccc
acccagcgtgctgaagcagccgtaaagagtgtcacgcataacgcccctgcacctgtttcg
ctacagacagaagaagcgcctgcaaaagtaacggcagcagcgacacccacgccagccccc
gccgccgatgagcagcccagcgtgattggccgtttcattcgtggtttcgccaagctgttg
ggtggtgaagacagtagcactcaacaaccggctgctgaggcacccgccccgcggaagtcg
gctgagcggagcgcgcccaaaagcacccgcagcaccgataataagcccaggcaaaccccc
gaaagcagcgagagcgccgggaagagcgagcagcgcagcaacactcagtcccgtagcacc
cctgctggcgatgatgctaacgacaagcgtagcggccctaaccgtacgcgtaatcgtcgc
cgtcatccgcagaacgaagacagcaagcctcaagacagtagcaataagagcagtcgccaa
agcgcaaaagagccttcaggcaatagcactgacgcccagcatgaggcagcgtccgctcag
cctgagagtcgtcgtgacactcagcgcgaccaagcaagagagcaaaaatcccgcgacagc
aagccacgggatagcaagccgcgtgatgaaaaagccaagagcgatgaaccacgcaacgct
gccgactgcgaggaaaagcaagagagcaagcaaccacctgcaccgcaggatgatggcacg
ccaaagcgcacacgcaacaacccgcgcaaccgctcacgcaagcaggccatcaacccgcaa
tctgaagccgagcagcaaaagctccaggctgaggccgcgcttaaagcagtggccacagta
gaggacacaacccaagccgtgccaagcacggagagccagccaacggcctctgcaacacaa
gagacgtctccagcagcgcccgttgactcaacaagcagccaagccgctcaagcgtctgat
gtcgaaaacggcgaagagacaacagcagagcagcctgcgaagccagccgaaaaggcccgc
aaagcaacgcatcagcgtcgtaagccacaggcagagcagcctgcacaagagactgcagca
ggtgatgagagccaacctatcgccaatgaatctgccagcgatacggccaaagctgagctt
gaggagacacccaagcctgcggctcctcaagaagcagaagagtctcagccagccgaggca
cctgagcagcctaaaacagcgccagtggccgacagcgaaccgaagcctgccgaagcggca
caggaacctgagcctaccgacacccagcagaatgaagcagcggctgaggatgttaaagcc
tctgaaacaggatcagaagagcgcgcgaccgaaacggcagctatcgccgagccgatagct
gatgaggcgaaggtcaacgaggcgaatgctgataaagttgcagcaactcaagccagcgct
ccaacgactacgccggtagaaaatgcagccgccgctgaagcgtcagtgccagaaaaatca
gcgccagtggcttcaccgcaaagcgacaccccgcagcctgaagaggcgcccgtggcagag
cagaaagaagctgagaatgcgtcaacggccgctaaggaagaaacaccgaagccaagccgt
cggcgccgtagtcgcgcgcacaacgacccgcgtgagctacgtaagcagcaagcgcaaaac
gctggtcaagagtaa
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