Halomonas sp. M1: P8S55_06900
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Entry
P8S55_06900 CDS
T10932
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hamz Halomonas sp. M1
Pathway
hamz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8S55_06900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamz03019
]
P8S55_06900
03009 Ribosome biogenesis [BR:
hamz03009
]
P8S55_06900
Enzymes [BR:
hamz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P8S55_06900
Messenger RNA biogenesis [BR:
hamz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P8S55_06900
Ribosome biogenesis [BR:
hamz03009
]
Prokaryotic type
rRNA helicases
P8S55_06900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WFE72817
LinkDB
All DBs
Position
complement(1532551..1534263)
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQIIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKNAQRVFFSATLPAEIERIVNRYLVDPVKVAIESRTTTGENIEQRIVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAI
ELACAFAAMARADEAPIGRLQAPRKEKPMRDGAPAGKPGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccttcgcccatccaggcgcagactatt
cctgcgttgttggaaggccgcgatatgctgggccaagcacaaaccggtaccggcaaaacc
gctgcgtttgcactgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ttggttatggctccgacccgtgagcttgctcagcaggttgcggcttcgttcagtaagtat
ggccaaaaccttaagggtcttgaagttgcgatcctgtgtggtggtcaagagtaccgtgag
cagttaggtgcactaaaacgtggtgcccaaattatcgttggcacccctggccgcatcatc
gatcaccttgatcgtggcagcttgaaacttgacggcctttcagcgctcgtgctggatgaa
gccgatgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaaaatgcacagcgcgtgttcttctcggcgacgttgccggcagaaatcgagcgcatt
gttaaccggtatcttgttgacccggttaaggtggcgattgagtcgcgtacgaccaccggt
gaaaacatcgaacagcgcattgtccgcgttgatggtggcgcaaagcttgaagccctggca
cgtattctggaagttgagccagttgatggggctatcgtgtttgtgcgtacccgtgcggcc
tgtaccacgctggttgaacagctaacggcccgtggtgttaacgcggcaggcctatcgggt
gatctcgatcagagccttcgtgagcgcactattacacgtttgaagcgcggcaaagttgat
gtgctgattgcgacagacgtcgctgcgcgcggtcttgacgtgtcgcgtattactcacgtt
attaactacgacctgcctcaggatgcggaagcctacacccaccgtatcggtcgtactggc
cgtgcgggtcgtagcggcatcgcgattaccttcgctggcttccgtgaaggccgcaaagtg
ggctggatggagcaggcaacgggtcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctattcgtgcccatcgcgatgaagtgttccatcaccgcgttgttgcagcgctgaccaaa
ggcgctgaagagcagcgtgcgctggttgagcgcttggtcgaagaaggccacgatgccatc
gagctagcctgtgcgtttgccgccatggcgcgtgctgatgaagcaccgattggtcgctta
caggcgccgcgcaaagagaagccgatgcgtgatggcgcaccggccggtaagccgggtgct
cgtcgtgagcgttcaagcgcgcctagcgaaggcatgacccgctaccgcgtttccgttggc
cataaagatggcgtgaagccaggtcaactggttggcgcactggcaaacgaaggcggtatt
gaaggtgcgcgtatcggtcgtatcgatatccgcaacgctttctcggtagttgaactaccc
agtggcctgccttccactattcttgcgaaaatggcccgtgcccgtgtggccggtcgtccg
ctagaaattagcgaagatagcgcccctgagcgtgcaccacgccgtcgtcgtgacgatggt
gacgcgccggttcgtcgccgcgaacgcgcttaa
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