Halomonas sp. M1: P8S55_12250
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Entry
P8S55_12250 CDS
T10932
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hamz Halomonas sp. M1
Pathway
hamz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P8S55_12250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hamz03021
]
P8S55_12250 (rpoC)
03400 DNA repair and recombination proteins [BR:
hamz03400
]
P8S55_12250 (rpoC)
Enzymes [BR:
hamz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P8S55_12250 (rpoC)
Transcription machinery [BR:
hamz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P8S55_12250 (rpoC)
DNA repair and recombination proteins [BR:
hamz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P8S55_12250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WFE70549
UniProt:
A0AAX3S3M7
LinkDB
All DBs
Position
2663906..2668120
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGHASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEIDIEEETGARSFHRRIYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTERGLTLHPIIEGGDIIVPLSQRV
LGRVVAIDVVDPRNDDILIPRGTLLDEKWCAELDTMGVDEIIVRSTITCETAHGVCSSCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGEVVDAGAVVAK
WDPHTHPVIAEVEGKAQFIDLDEGVTMHRTVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDASGEYVAVSGSNTPVQYLLPGNSIISVDDGATIGVGEVVARIPVEASANKDITGGLP
RVADLFEARKPKESSILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GEAVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEKKFPAKYQRMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtctttcggcgaggtgaagaag
cccgagaccatcaactaccgtacctttaaaccggagcgggatggcctgttctgcgccaag
atctttggcccagtgaaagactatgagtgtttgtgcggcaaatataagcgcatgaagcac
cgcggtattatctgtgagaagtgtggcgttgaagtcactaaagccgccgtgcgccgtgag
cgcatggggcacattgaactggcatcaccggttgctcacatctggtttctgaagtcactg
ccgtcgcgcatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctctac
ttcgaaagctttgtggttatcgatccaggcatgaccacgctggagcgtggtcagctgctg
aacgatgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgctgaagccgttcaagaactgctcaaagacattgatctggaagaagagattaatcat
ctgcgtgaagagattccgcagactaactccgaaaccaaaatcaagaagctctctaagcgt
ttgaagctgcttgaagcgttctaccactccggcaatgcgccggcgtggatggtcatggaa
gtgctgcctgtgctgccgccggatcttcgtccgctggtaccgctggacggcggccgcttc
gcgacctctgatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctgaag
cgtctgcttgatctgaatgcgccggatattatcgtgcgtaatgagaagcgtatgcttcaa
gaggcggtggatgcgctgctggacaacggtcgtcgcggccgtgcgatcacgggctctaac
aagcgcccgctgaaatcgctcgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacttgttgggtaagcgcgtagactactcaggccgttcggtgattaccgtgggtccgacc
ctgcgtctgcaccagtgtggtctgccgaagaaaatggccctggagctgttcaagccgttt
atctactccaagctgcagtcgctgggccatgcgtccacgattaaagccgcgaagaagatg
gtcgagcgcgaactgccggaagtatgggacatcctcgctgacgttatccgcgaacacccg
gtactgcttaaccgtgcgccgacgctgcaccgtttgggcatccaggcgtttgagccgctg
ttgatcgaaggtaaagcgattcagctgcacccgctggtgtgtgccgcttataacgccgac
ttcgacggcgaccagatggcggtacacgtaccgctgaccctggaagcccagcttgaagcg
cgtgcgctgatgatggccaccaacaacgtgctgtcgcctgctaacggcgagccgatcatt
gtgccgtctcaagacgttgttctgggtctttactacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgacctcaatgaggtagagcgcgcgtttggtacgcaa
tctgtgtcgctgcacgcccgcgtcaaagtgcgtctagacgaaattgatatcgaagaagaa
accggtgcgcgtagcttccatcgccgtatttacgacaccacggtaggtcgtgcactgctg
ttccgcattctgccggaaggcgtgccgtttgcgctgatcgatcagccgatgaagaagaag
gcgatctccagcctgatcaacgaagtttatcgtcgcgccggcctgaagccgaccgtcatc
ttcgctgaccagctgatgtataccggcttccgtttagcaacgtggtcgggtgcctctatc
ggtgttaacgatttcgttattcccgaggcgaaaactgagattgttgatgctgcagaagcg
gaagttaaagagatcgaagaccagttctcttctggcctagtaacggcgggtgagaagtac
aacaaggttatcgatatctggtccaaggctaacgataaagtcgccaaagcgatgatggtg
ggtatctctaaagagaccgtcatcgatcgtgaaggcaacgaagttgagcaagactcgttc
aacagcgtctttatcatggctgactccggtgctcgtggctctgctgcccagatccgccag
ttggcgggtatgcgtggtctgatggctaagccggatggttcgatcatcgaaacgccgatc
gtcgctaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggtgca
cgtaagggtcttgcggatacggccctgaaaacggctaactccggttacttgacccgtcgt
ctggtggacgtagcccaggatctggtcatcaccgagaccgactgtggtaccgaaagaggc
ttgacgctgcacccgattatcgaaggtggcgacatcatcgtaccgctgtctcagcgcgta
ctgggccgtgtggtagctatcgacgttgtggacccccgcaatgatgatattttgattccg
cgcggcacactgctggatgagaagtggtgcgctgagcttgacaccatgggtgtcgacgag
attatcgttcgctcgaccatcacctgtgaaaccgcccatggcgtgtgctcctcctgttat
ggacgtgatctggcccgtggtcatcaggtgaatatcggtgagtcagtcggtgtcatagct
gcccagtccatcggtgagccaggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgctcttcagctgttgacagcgttcaagtcaagcacggcggtaaggtgcgt
ctgcacaacatcaagcacgttgagcgtgccgacggtaagctggtggtggtttctcgctcc
agcgccctggccgttgccgacgaccacggtcgtgagcgtgagtactacaagctgccctac
ggcgctgagctttccgtacgtgatggtgaagtcgttgatgccggcgctgtcgtcgcaaaa
tgggacccgcacactcaccctgttatcgccgaagtagagggtaaggcgcagttcatcgat
cttgacgaaggtgtcaccatgcaccgtaccgtcgatgagatgaccggtctttcgtctatc
gaagttatcgagtcggcagcacgtccgatggcgggtcgcgataagcgccccatggtaatg
ctgcaggacgcgtcgggcgagtatgtcgctgtgtccggttccaatacgccagtacagtac
ctgttgccgggtaactcgattatctctgtcgacgatggtgcgaccatcggcgttggtgaa
gtggtcgcgcgtattccggtagaggcgtcggcgaacaaagatattaccggtggtctgcca
cgggttgctgacttgtttgaggcgcgtaagccgaaagagtcctcgatcctggccgaaatc
agcggtgtagtaagctttggtaaagagaccaagggcaagcgtcgtttgacgattaccccg
gagtctggcgacccgtttgaagcgctaattccgaagtggcgccaaattgccgtcttcgag
ggcgaggctgttgaaaagggtgaggtcatctctgatggtccaagtaacccccacgacatt
ctgcgcctactcggcgtcgcggagcttgcgaagtacattacggctgaagtacaggatgtt
taccgtctgcaaggtgtaggcatcaacgataagcacatcgaagtgattgtgcgtcagatg
ctgcgtaaggtagagatcaccgactccggcgactctgacttcatcactggcgatcaggca
gagctggttcgtgtgctggagcagaacgaacgtcttgaaaaagagaagaaattcccagcc
aagtatcaacgtatgctgctgggtattaccaaggccagcttggccactgagtcgttcatt
tccgcggcatcgttccaggaaacgacccgcgtactgaccgaggcagcggtaaccggcaag
cgcgattacttgcgtggcctgaaagaaaacgtggtagttggacgtctgattccggcaggt
accggtctgactcaccacgccgagcgtcgtcgcaagcgcgaagacgttgagcgtttgttc
aacccctcggcgaccgaggtagagcaagagcttggtgctcagttgaccgctcttgattca
gacgacgagctgtaa
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integrated database retrieval system
