Helianthus annuus (common sunflower): 110864396
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Entry
110864396 CDS
T05101
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110864396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110864396
03036 Chromosome and associated proteins [BR:
han03036
]
110864396
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110864396
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110864396
mRNA degradation factors
5'-3' decay
Decapping complex
110864396
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110864396
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
TFIIA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110864396
NCBI-ProteinID:
XP_021969140
LinkDB
All DBs
Position
6:complement(3549319..3554800)
Genome browser
AA seq
500 aa
AA seq
DB search
MNNSNYNNNNRRYPPGGTGNGRGGGSFHPNPNYYNQPRNPNQFHQQQRQQPPQSGQQQQQ
QHNQQQQQWLRRNPNPVGSSSANEIDKSVQLDAGVDPSSQDWKAQLNIPAADTRYRTEDV
TATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CIPALEKIDTDKNKIQVVILVPTRELALQTSQVCKELGKHLQIEVMVTTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLSKKGICKLSDCGMLVMDEADKLLSPEFQPSVEELIGFLPKQR
QILLFSATFPVTVKDFKDRYLKKPYVVNLMDELTLKGITQFYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPQIDQAIYCR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagcaactacaacaacaacaatcgccgctatcctcccggtggcaccggcaac
ggtcgcggcggtggtagttttcacccaaaccctaattactacaatcaaccgcgaaaccct
aaccaatttcaccagcagcagcgtcaacaaccaccacagtccggacaacaacaacaacaa
caacacaatcagcagcagcagcagtggttgcgacggaaccctaatcctgttggttcttct
tctgctaatgaaattgacaagtccgtacagttagatgccggtgttgatccaagctctcaa
gactggaaggcacaactgaacatacctgcagcagatacccgttacaggactgaggatgtc
actgctacgaaaggaaatgaattcgaggattacttcctaaaaagggagctacttatgggg
atctatgaaaaaggttttgaaaaaccgtcacctatacaagaagaaagtatccctattgca
ttgaccggaagtgatattctcgcaagagccaaaaatggaactggaaagacagcagctttt
tgtatcccggctctcgaaaagatcgatacagataaaaacaaaattcaagttgttatattg
gttccaacgagagaattagctttacaaacgtcacaagtttgcaaggaacttggaaaacac
ttacaaattgaagtaatggtcactactggaggaacaagtttaaaagacgatataatgcgc
ttatatcaacctgtccatttacttgtcggtacccctggaagaattctcgatctttccaaa
aagggaatatgcaaattgtctgattgtggaatgttagtcatggatgaggctgataaactg
ttatctccagagtttcaaccgtcagtggaagagttaatcggatttctacctaaacagaga
caaattctgctgttttcagccacgtttccggttacagtcaaagattttaaagacagatac
ctgaaaaaaccttatgttgttaatttaatggatgaacttactcttaaaggtatcacacag
ttttacgcttttgtagaagaaaggcagaaggttcactgcctcaatacgcttttctctaag
ctgcaaatcaaccaatcgattatcttttgcaactcggtcaatcgggtcgagctattagcg
aagaaaattaccgagcttggttactcttgcttttatattcatgctaaaatgttgcaagat
caccggaatagggtttttcacgactttcgcaatggtgcttgcaggaatcttgtttgtact
gatctatttacaaggggtatagatattcaagcggtaaacgttgtgatcaattttgatttt
ccgaagaatgccgaaacatatctgcacagggtgggtcgttctggaaggtttggacatttg
gggttagctgtgaatttgataacatatgaagaccgctttaatttatataggatcgagcag
gagcttggaacggaaataaaacaaattcctccgcaaatcgatcaagccatttattgtcgt
tga
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