Helianthus annuus (common sunflower): 110864850
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Entry
110864850 CDS
T05101
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110864850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110864850
03012 Translation factors [BR:
han03012
]
110864850
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110864850
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110864850
Translation factors [BR:
han03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110864850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
R3H
HA2_N
Ank_2
ATPase
Ank_5
nSTAND3
Ank
AAA_22
AAA_19
AAA_7
PhoH
Ank_3
ABC_tran
Sigma54_activat
Rad17
AAA_25
Motif
Other DBs
NCBI-GeneID:
110864850
NCBI-ProteinID:
XP_021969706
LinkDB
All DBs
Position
6:18519278..18526759
Genome browser
AA seq
1204 aa
AA seq
DB search
MMPNSSTKKRRNRGGGQHQQQQRQQPVAVAEGTRIHIRRTLEEFRASDEDVYTFEANLTN
FERAEVHKLCRKMGMKSASSGSKTGNNRRVSVYKFKKKSNDTKEKSNLTSFTFSEEGKTV
LRDFFSHYPPGDHREAENISATSSKNTDNTRTKTDDILSKPLMKKAEIAKKVESLVARSQ
SDVKLKQITEDRFKLPIASFKDMITSTIESNQVVLISGETGCGKTTQVPQYLLDSMWSKG
DACKIVCTQPRRISAISVAERISFERGENIGESVGYKIRLENKGGRHSSIVFCTNGVLLR
VLVKAGNSRAGKEKSTKMVKDAFPDITHIIVDEIHERDRFSDFMLTIIRDMLPLYPHLRV
VLMSATLDAERFSQYFGGCPIIRVPGFTYDVKKLYLEDVLLLLKSKSTKVGHRDDRTTKT
NIDDDSELTEDYKVALDEAINIAWSSDEMDSLLDIVSVGEGLNVLNYQHSVTGVTPLMVF
ARKGRVGDMCMLLSFGADCHLQDNEGKTALSWAEHENQKETSEILRKHLNKTSVDPKEEK
LLLDRYLQDVDPELIDVILIEQLLRKICTESEEGAILVFLPGWDDINKARDKLTSSSFFK
DTSKFLILALHSMVPSSEQKKVFKRPPHGCRKIILSTNIAETAVTIDDVVFVIDSGRMKE
KSYDPYNKVSTLQSSWISKASAKQREGRAGRCQAGICYHLYSKLRAASLLEFQVPEIKRT
PIEELCLQVKLLDPSCKIEDFLKKTLDPPVSESIQNAITILQDIGALSPDEELTELGEKL
GSIPVHPLTSKMLLFAISMNCLDPALTLACANDYRDPFTLPMLPNDKKKATAAKCELASL
YGSHGDQLAVIAAFECWKNAKQKGQEARFCSQYFVSGGVMNMLFGMRKQLQHELYRNGFI
PENSSRFSENSHDIGIIHAVLVAGLYPMVGRLHPPRKNAKRIVIENANDDKVRLHPHSVN
SRLSFKKKDVNPLVIYDEITRDDGGLNIKNCSIIGPLPVLLLATEIAVAPLDDEDDDSED
DDETVYEDSDEDGNGNDERCDDKIMSNPENVVKVIADRWLCFESTALDVAQIYCLRERLS
AAVMFKITHPGKDLPELLAASIHAIANVLSYDGLSGINGPLESVDSLTSMVRETNIGQPG
AVRGSNNFLRSLLSNGSQHYSQKQGVGFKHQVHRQYNSAPQNRHQNQGNGSNAPKGETHK
RHRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaaattcatccaccaaaaaaaggcgaaacagaggcggaggtcaacaccaacaa
cagcagcggcagcaaccggttgcggttgcggagggtacccggattcatattcgacgaacc
cttgaagagtttagggcttctgatgaagatgtgtacacatttgaagccaaccttacaaac
tttgaacgtgctgaggtgcacaagttgtgcagaaaaatgggtatgaagtcggcaagctcc
gggtctaaaacggggaataataggcgtgtttcagtttacaagttcaagaaaaagtcaaac
gatacaaaggagaagtcaaatctcacatcttttacattttcagaagaggggaaaacagtt
ttaagagattttttctctcattatccacctggtgatcatcgggaggctgaaaatatttca
gccacatctagtaaaaataccgataacacacgaacaaaaacagacgatattctcagcaaa
cctttgatgaaaaaggcagaaattgcaaagaaggttgaatcacttgttgccagatcgcaa
tcggacgtcaagttaaaacagattactgaagataggtttaaacttccaattgcatccttt
aaagacatgattacatcaactatagaatctaatcaggtggtcctcatatctggtgaaacc
ggttgtggaaagacaacgcaggtacctcaatatttgctggattctatgtggagtaaaggc
gatgcatgtaaaatagtctgcacccaaccacggagaatctctgcaatatcagtggctgaa
agaatatcgtttgaaagaggtgaaaatatcggagagagtgttggatacaagataaggttg
gagaacaaaggtggaagacattcatccattgtgttttgcacaaatggggtcttgttgagg
gttttagttaaagctggcaacagtagggccggtaaagaaaagtcaacaaagatggtcaaa
gatgcatttccagacatcacccacatcattgtggatgaaattcatgaaagggaccgattt
tctgattttatgctgacaatcatcagagatatgcttcctttgtaccctcatctacgtgtg
gtattgatgagtgctacactcgacgcggaacgcttttctcagtacttcggaggttgccca
attatacgcgttccggggttcacttacgatgtgaaaaagctctatctagaggatgtactt
ttgcttttgaaatcaaagtcaacaaaagtcggtcatcgtgacgaccgcactacaaaaaca
aacatagacgacgattcggaattaaccgaagattataaagttgcccttgatgaggctatt
aatatagcgtggtcaagtgacgagatggattccttattagatatcgtttcagttggtgaa
ggattaaacgttctcaattatcagcattcggtgacaggtgtcacaccattaatggtcttt
gctagaaaaggaagagtcggcgatatgtgcatgcttctttccttcggtgccgattgtcat
ttacaagacaacgaaggaaaaaccgcactttcatgggcagaacacgaaaatcagaaagaa
acttccgagattttaagaaaacatttaaacaaaacatcagtagatccaaaagaagaaaaa
cttttactcgatcggtatttgcaagatgtcgacccagagttaattgacgttatcctcata
gaacaattactcagaaaaatatgtacggaatccgaagaaggtgctatactcgtttttctt
ccgggatgggacgatataaacaaagcacgagataagttaacttcaagtagtttttttaaa
gacacttctaagtttttgatattagcgcttcattctatggtcccgtcttcagaacaaaag
aaagtttttaaaagaccacctcacggttgcagaaagattattctttcgacaaatatagcg
gaaacagctgtcacgattgatgatgttgtttttgtaatagatagtggaagaatgaaagaa
aaaagttacgacccatataataaagtttcgaccttacagtcttcttggatttcgaaagca
agtgcaaagcagcgggaaggacgggcagggcggtgccaagctggaatatgttaccatctt
tattcgaaacttcgggcagcttcactgcttgagtttcaagtgcccgagatcaaaagaacg
cctattgaagaactatgtttgcaggtgaagcttcttgacccaagttgcaaaatagaagat
ttcttgaaaaaaacattagaccccccggtctccgaatcgattcaaaatgcaatcactatt
cttcaagatatcggagccttatcaccagatgaagaactcactgagctcggggagaaactt
ggttcgattcccgttcacccgttaacaagcaagatgctcctttttgctatatcaatgaac
tgccttgacccggctttgactttagcttgtgcaaatgactatcgagacccgttcaccctc
cctatgttacctaacgataaaaagaaagcgaccgctgctaaatgtgagttggcttcttta
tatggcagccatggtgatcaactagcggtaatagcagcctttgaatgctggaaaaacgcc
aaacagaagggtcaagaagcgcggttttgttctcagtattttgtatccggtggtgttatg
aatatgttattcggaatgcgtaagcaacttcaacatgaactatataggaacgggtttatt
ccggaaaattcatctaggtttagtgaaaattctcatgatattggtataattcatgcggtt
cttgttgcgggtttgtatccgatggtgggaagattacatccacctagaaagaacgcgaaa
cggattgttatagagaatgctaacgatgataaggttcggctgcaccctcattcggttaat
tctaggttaagttttaagaaaaaagacgtcaaccctttggtgatttatgatgaaataaca
cgtgatgacgggggtttgaatattaagaattgtagtattatcggcccgcttcctgtatta
ttgctagcaacggagattgcggttgctcctcttgatgatgaggatgatgatagtgaagat
gatgacgagacggtttatgaagatagtgatgaagacggtaatggtaacgatgaaagatgt
gacgataaaattatgtcgaatccggagaatgtggttaaagttattgccgacaggtggctt
tgtttcgagtcaacggctcttgacgttgctcagatttattgtttgagagaaagattgtct
gctgcagtcatgtttaagatcacacaccctggaaaagatcttcctgaactacttgctgcc
tctatacatgcaatagccaatgtgttatcttacgatggactttctgggattaacgggcca
ttggaatcggttgactcgttgacttcaatggttcgagagactaatattggccagccaggg
gcagtgaggggatcaaataactttcttagatcacttttatcgaacggttcacaacactac
tcccagaaacaaggggtagggttcaaacatcaggttcatcgtcaatataattcggcacca
caaaaccgacatcaaaatcaggggaacgggtctaatgctccgaagggtgaaactcacaaa
cgccatcgagcttga
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integrated database retrieval system
