Helianthus annuus (common sunflower): 110865829
Help
Entry
110865829 CDS
T05101
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110865829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110865829
03019 Messenger RNA biogenesis [BR:
han03019
]
110865829
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110865829
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110865829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
110865829
NCBI-ProteinID:
XP_021970842
LinkDB
All DBs
Position
6:118652030..118659174
Genome browser
AA seq
846 aa
AA seq
DB search
MEINSTSRGGRPFDRPVRDPATMKKPRLMRGDNNVSNGGATARPVVVQRQSVLGFRSETG
DSIRDGGGYHPQALSQVQLQQQHQELVDQYRTALAELTFNSKPIITNLTIIAGENAHAAK
AIAATICSNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPAVH
SGMRHLFGTWKGVFPPQSLQLIEKELGFQSVANGSSSLEPDPQSQRPARSIHVNPEYLEA
QQRLQQSSTAKGPTSDTNLINTHENTNRQGRTSANITSNPRLKMLQNIPQAQRNVGSVIR
ENERAPYNDFDSSEIVNEQGFGNSLYGPASNSTETISGHRNGFDMRSANADGKLQPTNNI
TKRNGELNRSWKHSEEEEYMWDGMNSRLPNSVKSSGNSKRDPRSHPGPEKLGFQNHLQKS
QGIQDTGSRVDREASTDSPSVARPQGPAFNGVSTSINSILKSSLQPQIGSSHVGASGLLG
FPPSAVKQRHTPGAASPLLHHPPTPSFPTHTSGRLLNNFTGQDGKPALSRGEINTGLSNQ
SPQDSFHTGDSQKPQMQLPLNTKKHGPVRSPATKTSSDANTLVGSSSDHIRSPTLQKEAE
LPPVSSLLSTLVAKGLISASKADSPSDQTLKRNADPKIDTPAVLVPEKTILPLPKDEPSA
VKGSVDTEDVKSVIGFEFKPDVIRRSHPAVISQLIIDELPHQCHICGLRFKLVERFDKHI
EWHTLNNPELNTPNKASRRWFTKSDDWVKEKPEVRSSDETTGPVQIDGEQMVVADESQCA
CVLCGEVFDDFYWQEMGKWMFRRAVYLNTKDENIGDTYGPIVHAHCISGNSLSDLGLSND
VNKEGE
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggagataaatagcacttctcgtggtggtagaccgtttgatagacctgttagagatcct
gcaacaatgaaaaaacctagattaatgcgcggcgataataatgtttccaacggtggtgct
actgctaggccggttgttgttcagcggcaatccgtgttaggttttcggtcggaaaccggt
gattcgattagagacggaggaggttatcatccgcaagcgttatcgcaagtgcagctgcag
cagcagcatcaggagcttgtggatcagtacaggactgcgttggctgagctgacgtttaat
tcgaaaccgattattactaacttgactatcattgcgggagaaaacgcgcatgctgcgaaa
gctatagctgctactatctgcagtaatattctcgaggttccgagtgatcaaaagcttcca
tcactataccttcttgacagtattgtgaagaatattggcagagattacatcaaatacttt
gctgcccgattacctgaggttttctgcaaggcatatagacaggttgatcctgcagtacat
tccggaatgcgacatctgtttgggacttggaaaggtgtattccctcctcagtcactacaa
cttatagagaaagaacttggtttccaatcagttgcaaatggatcgtcttctttagagccc
gacccacaatctcaacgccctgctcgaagtattcatgtaaacccggagtatttggaggca
caacagagactccaacagtcaagtacggcaaaaggtccaacgagtgatacaaacttgatt
aacacacatgagaataccaatagacaaggcaggacatcagccaatattacttcaaatcct
cggcttaagatgttgcagaacattccgcaggcacaaagaaatgtggggagtgttatccgt
gagaatgaacgtgcaccgtataatgattttgattcaagtgagatagttaacgagcaggga
tttggcaattcgttgtatggacctgcgagcaatagtacagagactatatcgggccataga
aatggcttcgacatgagatctgcaaatgccgatggcaagttacagcctacaaataacatt
acaaaaagaaacggtgaattaaataggagttggaagcattcagaggaagaggaatatatg
tgggatggcatgaactcacgattaccgaattctgtcaaatctagtggtaactcaaagcga
gacccccggtcacaccccgggcctgaaaagttgggttttcagaatcacctccaaaagtca
caagggatacaagatacggggtcaagggttgatagagaagcttcaactgattcaccatca
gtagcaaggccacaagggccggctttcaacggggtatccacatctattaactccatctta
aaatcttctttgcagccacaaatagggtcctctcacgttggagcctcgggactactcggg
tttcctccaagtgcagtaaagcaacggcatactcccggagctgcatcaccgctgctccac
catcctcctacaccctcgttcccaactcatacttcaggtagattactgaataattttacg
ggccaagatggtaaaccggctctatctcgaggggaaataaacacaggactttctaatcag
tctcctcaagattctttccatacgggtgattctcaaaaaccccaaatgcagctgccgtta
aatacaaaaaaacatggacctgttcggtctccagctacaaagacgtcttctgatgcgaac
acattggttggttcatcttcggatcatattagatctcctactttgcaaaaagaagcagaa
ttgccacctgtctcgagtcttttgagtacgctggttgccaagggcttgatctctgcatca
aaggccgattctccatctgaccaaaccctgaaaagaaacgcggacccgaaaattgatacg
ccggcagtacttgtaccagaaaagacgatattaccccttccaaaggacgagccatctgct
gtgaaaggtagtgtggataccgaagatgtaaaaagtgttattggttttgaatttaagccc
gatgttattcggaggtcacatcctgctgttatcagccaactcattatcgatgaacttccg
caccaatgccacatatgcgggttaaggtttaaactcgtagaacgtttcgataaacacatt
gagtggcacacacttaataatcctgaactgaacactcccaataaagcatccaggagatgg
ttcacaaaatctgacgattgggttaaagagaagcctgaagtgcggtctagtgatgagacc
actggtcccgtgcagattgacggtgagcagatggttgttgctgatgaaagccaatgtgcg
tgtgttttgtgtggtgaggtgtttgatgacttttactggcaagaaatgggcaaatggatg
tttagaagagctgtgtacctcaacaccaaagatgaaaatattggtgatacttacggtccc
atagtgcatgcgcattgtatatccggaaattccctttcagatttgggcctatccaatgat
gttaataaagaaggcgagtaa
DBGET
integrated database retrieval system
