Helianthus annuus (common sunflower): 110865926
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Entry
110865926 CDS
T05101
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
han
Helianthus annuus (common sunflower)
Pathway
han04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
110865926
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
110865926
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
han02000
]
110865926
Transporters [BR:
han02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
110865926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
110865926
NCBI-ProteinID:
XP_021970959
LinkDB
All DBs
Position
6:complement(141983239..142001108)
Genome browser
AA seq
1285 aa
AA seq
DB search
MKLYTCFQVLLFISIGSAEQSNKQIVSTSNPTPREKHGENYCAMYDICGTRSDGKVVNCP
FGSPSVKPNDLLSSKIQSLCPTISGNICCTEAQFDTLRSQVQQAIPFLVGCPACLRNFLN
LFCELSCSPNQSQFINVTSISQMKDNSTVGGIDYYITDTFGEGLFNSCKDVKFGTANSKA
IDFVGNGAKNFKEWFAFIGRKAGLQLPGSPYAINFRSDADVSVKMKPMNVTTYSCGDTSL
GCSCGDCPSSAVCSSSAPQLLHEKGSCSVRIGTLKARCIEVSVAMVYILLASMFLWWGLL
HKRKEMNPTLRTKSMMNVTKGGPVHQVHGKKDENIPMQMLEDNPQITSGVQLSVVQGYMA
KIFRSYGTWVARNPILILGSSMAVVLFLSVGLVSFNVETRPEKLWVGHGSRAAEEKQYFD
SHLAPFYRIEQLLLATKPQGAHMKPPSIVTDENIKLLFEIQEKVDGIRANFSGSLVSLTD
ICMKPLGEACATQSILQYFKMDPKNFDDFGGVDHAEYCFQHYTSDENCMSAFKGPLEPST
ALGGFSGNNYSEASAFIITYPVNNAIDKEGNKTKRAVTWEKAFIQLVENELLPMVKSKNL
TLSYSSESSIEEEMKRESSADAITILISYLVMFAYISLALGDTPRFASFYISSKVLLGLS
GVILVMLSVIASVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQVELPLE
GRISNALAEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAILLDFLLQVTAFVA
LIVLDFLRAEDQRVDCFPCITTSGSLTDTDQGNDQRRYGLLTRYMKEVHAPVLSVWWVKL
LVISVFAALSLASIALCTRIQPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNY
NYSSESGLTNKLCSINHCDSNSLLNEISKASLVPTSSYIAKPAASWLDDFLVWVSPEAFG
CCRKFTNQTYCPPDDQPPCCSSSDGSCTVNGVCKDCTTCFRHSDLQNDRPTTAQFKEKLP
WFLDALPSADCAKGGRGAYTDSVELTGFEDGIIPASSFRTYHTPLNKQVDFVDSMRAARE
FSSRVSNSLKIEVFPYSVFYMFFEQYLDIWKTALVSLAIATGAVFVVCLVITCSIWSSGI
IFLVLVMILVDLLGVMAVLNIQLNAVSVVNLVMSVGISVEFCVHITHAFLVSSGDRDQRM
KESLATMGASVFSGITITKLVGVIVLCFSRTEIFVVYYFQMYLALVLLGFLHGLIFLPVM
LSMLGPPSRRVLVERKDDNKSCASP
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttacacatgctttcaggtcttgttgtttatatctataggcagtgcagaacag
tccaataagcaaatagtttcgacttccaatcccacaccacgggaaaaacacggtgaaaac
tattgtgcgatgtatgatatatgtggaacacggagtgatgggaaagtagtgaactgccct
tttggttctccatccgttaagccaaatgatttattatcatctaagatccaaagtttgtgt
ccaaccatttctggaaacatatgttgcacagaagctcaattcgatacattgcgttcacaa
gtccaacaagctataccctttctagtcgggtgtccagcatgcttacgtaattttttgaac
ctcttttgtgaactttcatgctctccaaatcagagtcaattcatcaatgtgacttctatt
tcgcagatgaaggataattcgactgtgggtggaattgactactatataactgacaccttt
ggagagggtttatttaattcctgtaaggatgtaaagtttggtaccgcgaattctaaggct
attgattttgtcggaaatggtgctaagaatttcaaagagtggtttgctttcatcggtcga
aaagcaggccttcagttaccaggttcaccctatgcaataaactttcggtcagacgctgat
gtgtcagtaaaaatgaagcctatgaacgtcactacttattcatgtggtgacacatcacta
ggctgctcttgtggtgattgtccttcctctgctgtttgttccagttctgcccctcaactg
cttcacgaaaagggttcttgctcagtgaggattggcacacttaaggcaagatgcattgaa
gtttcggtagcaatggtgtatattttactggcctccatgtttctttggtggggtttgttg
cataaaagaaaagaaatgaacccgactttgagaacgaagtcgatgatgaacgtgactaag
ggtggtccggtacaccaggtccacgggaaaaaagacgaaaatatccccatgcagatgttg
gaggataaccctcaaatcacaagtggggttcagctttcagttgtgcaaggatatatggcg
aaaattttccggtcatatggaacatgggttgcgagaaatccaattctcatcttgggttca
tcaatggctgttgttctttttcttagtgtaggcttagtcagttttaacgtagagacacgg
cctgaaaagctttgggtaggtcacgggagtagagcagcagaagagaaacaatacttcgac
agccacctggcaccgttctacagaatcgagcagcttctattggcaaccaaacctcaaggt
gcacatatgaaaccgccaagtattgtcacagatgagaatattaagttgctttttgaaata
caggagaaggtagatggaattcgagcaaatttttctggatcattggtttctttgacagac
atatgcatgaaacctctgggtgaggcttgtgccacacaaagtattcttcagtatttcaaa
atggaccctaaaaactttgatgactttgggggtgttgaccatgctgaatactgctttcag
cattacacttctgacgagaactgtatgagcgcattcaaaggcccactagaaccaagcaca
gcattaggaggtttctccggtaacaattactctgaggcatctgcatttattataacttat
cctgttaacaacgccatcgataaggaaggtaacaaaactaaaagagccgtcacttgggaa
aaggccttcattcagttagtcgagaatgagctccttccaatggtgaaatccaagaatttg
acattatcatattcatctgaaagctccattgaagaagaaatgaaaagggaaagtagtgca
gatgctataacaattttgataagctatcttgtgatgtttgcttatatatcattggcattg
ggtgacactcctcgcttcgcttccttttatatctcttccaaggtattgcttgggctttct
ggagtaatacttgtgatgctctccgttattgcatcagtcggttttttcagtgcaattggc
gtaaaatctacactaatcatcatggaagtcatcccttttcttgttttggctgtgggggta
gacaatatgtgcattctcgtacatgcagttaaaaggcagcaggttgaattaccattggaa
ggccgaataagtaacgcacttgcggaagtgggaccgtctataactctagcgagtttatca
gaggttttggcgtttgcggttggaagtttcattcctatgccagcatgtcgggtattttct
atgtttgcagcactggctattctgttggacttccttctgcaagttaccgcgtttgtagcg
ttaatcgttttagattttctgagagctgaagaccagagggttgattgttttccttgtatt
acaacttcgggttcacttaccgataccgatcaaggtaatgatcagagaagatacggatta
cttacacgatacatgaaggaggttcatgcacccgttctaagcgtatggtgggtcaaatta
ctagtcatttcagtgtttgctgctttatcattggccagcattgcactatgcacaaggatt
caacctggtttggaacaaaaaatcgttctgcctcgtgactcatatcttcagggttatttc
aataatgtctcagaatacctgagaattggcccacctctatattttgttgtgaaaaactat
aattacagttcagaatcaggtctgacaaataagttgtgctcaataaaccactgtgattcg
aactcccttttgaacgagatatcaaaagcgtctctggtaccgacatcaagctacatcgct
aaacctgctgcttcatggcttgacgattttcttgtttgggtatctccggaagcttttggc
tgctgcaggaagttcactaatcaaacttattgtcctcctgatgaccagcctccttgttgt
tcttcaagtgacggttcttgtactgtaaatggagtttgcaaagactgtaccacgtgtttc
cgtcactcagatttacaaaacgatcgtccaactaccgcacaattcaaggagaagcttcca
tggttccttgatgctctaccttctgctgactgtgcaaaaggtggtcgtggggcctacaca
gatagcgtggaacttaccggctttgaggatggtattattccagcatcctccttccgtaca
tatcacacacccttgaacaagcaggttgattttgtcgactcaatgagggctgcacgagaa
tttagctctcgggtctccaattccttaaagattgaggtttttccttattcggtattttac
atgttctttgagcaatatcttgacatatggaagacagcattggtcagtcttgcaatagct
actggcgccgtatttgttgtctgcctggttattacatgcagcatatggagctcgggaata
atctttcttgtgctggtgatgatccttgtggatctcctgggagtcatggctgttctgaac
atccaactgaacgctgtatccgttgttaaccttgtgatgtcagttggtatttctgttgag
ttttgtgtacatataacacatgcttttttggttagtagcggtgatagagatcagcggatg
aaggagtctttggctacgatgggtgcttctgttttcagcggaataacaatcacaaaactg
gtaggagtaatcgtcctttgcttttcaaggaccgaaatatttgtggtttattacttccaa
atgtacttggccttggttcttctcggtttcttgcatggtttgatattcttaccggtaatg
ctaagcatgttagggccgccttcaagacgagtacttgtcgagagaaaagatgataacaag
tcttgtgcttcaccgtag
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