Helianthus annuus (common sunflower): 110866000
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Entry
110866000 CDS
T05101
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110866000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
han03009
]
110866000
Ribosome biogenesis [BR:
han03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
110866000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_VPS8
NBCH_WD40
PEP5_VPS11_N
WD40_RFWD3
VPS8_N
Beta-prop_SCAP
B-prop_COPA_B_2nd
PROPPIN
VID27
Utp12
Motif
Other DBs
NCBI-GeneID:
110866000
NCBI-ProteinID:
XP_021971048
LinkDB
All DBs
Position
1:100171865..100180698
Genome browser
AA seq
908 aa
AA seq
DB search
MGIFEPFRAIGYITSSVPFSVQRLGTETFVTVSVGKSWQIYNCAKLSLVLAGPQLAKKIR
ALASYRDYTFAAYGNDIGVFKRAHQVATWSSHNAKVNLLLLFGEHVLSVDVEGNIFIWAF
KGIEENLSPVGHILLDSKFTPSCIMHPDTYLNKVILGSQDGSLQLWNINTKTKIYDFLGW
NSSIHCCVSSPALDVVAVGCADGKIHVHNILVNEEIVTFSQSTRGAVTSLSFRTDGQPLL
ASGSSSGVISIWNLEKKRLQSVIRDAHDSSVISLHFFANEPVLMSTSADNSIKMWIFDTT
DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVTKR
AKKLKVKEEEIKLKPVIAFDVAEIRERDWSNVVTCHMDTPHAYVWRLQNFVLGEHILTPT
TDIQAPVKACAISTCGSFAIIGTAAGWIEKFNLQSGLSRGSYVDASEKGNSAHDGAVVGV
ACDSTNSLMISAGYNGDIKVWSFKGRELKSKWEIGCTVVKIVYNRSNGLLATVTDDLVIR
MFDVVALKLVRKFEGHTDRITDICFSEDGKWLMSSSMDGTLRIWDVILARQIDAIHADVP
ITALSLSPNMDVLATTHVDQNGVYLWVNQAMFSGATNIDSYGSGKEVVNVKLPSVSSGGD
SKDDVDSDKPVSTDPQAQAQPVTHTPLLDQQIPDLVTLSLLPKSQWQSLINLDIIKARNK
PIEPPKKPENAPFFLPSIPSLSGEIVFKAGEPMDEEKPTHDDKFTRFTDLPSSPFVQFLQ
SSVETKNFEAFTDYLKSLSSSTLDVELRMLQIIDDDDEQEPEKRPELITLEQLLDYFIHE
ISHRNNFEFIQALIRLFLKIHGESIRRQSKLQAKAQKLLEAQSAVWQKLDGLFQSARCMV
TFLSNSQF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggggatattcgaaccttttcgtgcaatcgggtacataaccagcagcgttccgttctcc
gttcaaagattgggcaccgagaccttcgttacagtcagcgtcggcaaatcatggcagatt
tacaactgtgccaagctcagtctcgttctcgctggtcctcaacttgcaaaaaagattcgt
gctctcgcatcttatcgtgactatacatttgctgcatatgggaatgatattggcgtattc
aagcgtgctcatcaggtggctacatggagcagccataatgctaaggtgaacttgttgctt
ctattcggagaacacgtccttagtgtcgatgtagaaggaaacattttcatatgggccttc
aaaggaatcgaggaaaatctctctccagttggacatattttgctagatagtaaattcact
ccaagctgtatcatgcatcctgacacttacttaaacaaggtgattcttggaagtcaagac
ggttcacttcaactttggaatatcaacacaaagacaaaaatttatgactttttaggctgg
aattcatctatacattgttgtgtttcttctcctgctttagatgttgttgctgttggttgt
gctgatggaaagattcatgtgcacaatattcttgttaatgaagaaattgttacttttagt
caatccactcgaggtgctgtgacctctttatccttcagaacagatggtcaaccccttcta
gcatctggaagttcatctggtgtcataagcatatggaatcttgaaaagaaaagactccaa
tccgttattagagacgcacacgacagctctgtgatttcattgcatttctttgcaaatgaa
cccgtgctaatgagtacatcagcagacaactctataaagatgtggatttttgacacaact
gacggtgatcctcgtttgctaaggtttcgaagtgggcatagtgcacctcctctatgtata
aagttctatgctaatgggagacatattctgtctgccggccaagatcgtgcttttcgtcta
ttttctgttgttcaggatcaacaaagtagagagctttctcaacgtcatgtaacaaaaaga
gcaaagaaactcaaagtgaaggaagaagaaataaaattgaagcctgtgattgcatttgat
gttgctgaaattagggaacgggattggtccaatgtagttacatgtcatatggacacacca
catgcgtatgtttggaggctacagaattttgttcttggtgagcatatcctcacacctact
acagatattcaagctccagtcaaggcctgcgctatcagtacatgtggcagctttgctata
atcggcacagcagctggttggatcgaaaaatttaatcttcaatcaggcttgagccggggg
tcttatgttgacgcttcagaaaaaggaaactctgctcatgatggagcggtggttggtgta
gcatgtgattcaacgaattcgctaatgattagtgctggatataatggggatataaaagtt
tggagttttaaagggcgtgagctgaagtcaaagtgggaaattgggtgcactgtggttaag
attgtttacaatcgttctaatggtctcttggctactgttacggatgatttagttatccgt
atgtttgatgttgttgcattaaaactggttaggaagtttgaaggtcacaccgacagaatc
accgacatttgttttagcgaggatggaaaatggctgatgtcatcaagtatggatggcact
ctcaggatatgggacgtcattttagcaagacagattgatgcaatacatgctgatgtacct
ataactgctttatcgttgtccccaaacatggatgttttggcaactactcatgttgatcag
aatggagtttatctttgggtaaatcaggcaatgttttccggggccacaaatatcgattct
tatggaagtgggaaggaagtagtgaacgtaaagttgccttccgtctcatctggaggagat
tctaaagacgatgttgattccgataagcccgtttcaaccgaccctcaggcccaggcccag
cctgtaactcacactccactgctcgatcaacaaatcccagatctagtcacactttcattg
ctcccgaagagccagtggcaaagtttgatcaatctggatatcataaaggcccgcaacaag
cccattgagcctccaaaaaagcccgaaaacgcacctttctttttaccttctattccatct
ctctctggagagatagtatttaaggcgggtgaaccaatggatgaagaaaagccgacacac
gatgataaatttacccgatttacagatttgccctcgtcaccttttgtacagtttctgcag
tcgtctgttgagacgaaaaattttgaggcgtttacggattatctcaaaagtttatcttct
tcaacattggatgtggaactaaggatgcttcagattatcgatgatgatgatgaacaagaa
cctgaaaagagaccggagttgattacccttgaacagttactcgactattttatacatgaa
atctcacacagaaacaacttcgagttcatacaggctctgattcggttgttcttgaagata
catggtgaaagtataagaaggcaatccaagctacaagccaaggcacagaagcttctagaa
gctcaatctgctgtttggcagaagttggatggattgtttcagagtgccagatgcatggtc
acatttcttagtaactcacagttttga
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