Helianthus annuus (common sunflower): 110868158
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Entry
110868158 CDS
T05101
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110868158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110868158
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110868158
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110868158
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
110868158
NCBI-ProteinID:
XP_021972944
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Position
13:complement(72915040..72924081)
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AA seq
826 aa
AA seq
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MGASRKLQIEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKTRPPRLTHLESSITRHKA
HIMKLELLLRLLDNDELSPEQVNDIKDFLDDYVERNQEDFDEFDDVDMLYSTLPLDKVES
LEDLVTSGPPGLVKGAGATGAGLSIKSALSPSSAPSVATTTTSIQQGDTTQEQVNDAGPK
NASILSASPTGTQAIPVGSSSVKGILDNSTSSVSPSSINIAAKGEEIGRKPSPALPESGL
RNVGRTGVTNIPAISIPVTASGTVSSSGSLGVSLETPRRAMLGADERLGGSGIVSPLVSS
LNSRMVLPPGGKAGDAVSGGDSGSNGEAAGVTSRVFSASGVSGLQWRPGSPFQSQHEGIH
RRPEIVPDQRENYLQRLQHVQQGQGTLLGMPSLSGGNHKQFTTQQNPLLKQLNSQSSAAS
PQGAGLIVATSEQQKESSILIPTGSKDTVDEPQQHQNQLDDSVTSNVLDKNTANEDVSKV
SYTVDTQAGVPGSVTEADKVTRDVDLSPGQPLQPGQTASLGVIGRRSVSDLGAVGDNPSG
LSSTVGPTHDQQYILQLLESSFYKLPQPKDSERAKTYIPRHPAVTPQSYPQVQAPIVSNP
AFWERHGSDNTGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKFNTWFQRHEEPKVA
TDDYELGTYVYFDFHMGNEEMQQGWCQRIKNEFKFEYSFLEDELLV
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtagaaaacttcaaattgagatcgatagggttttgaaaaaggttcaagaa
ggcgtcgatgtgttcgatagcatctggaacaaggtttacgatacggataatgcgaatcag
aaggagaagtttgaggctgatttgaagaaggagattaagaagctgcagaggtatagagat
cagattaagacatggatacagtctagtgagatcaaggataagaaggttagtgcgtcttat
gagcaggctctgatggatgcacggaagcttattgaaaaagaaatggaacggtttaagatc
tgtgaaaaggaaacaaagacaaaagcattctctaaggaaggcctcggacagcagcctaaa
acagatccgaaagagaaagcgaagtcagagaccagagactggctgaacaatacggtgtct
gagctggaatctcaaattgatagttttgaagctgagatggagggactatctgttaaaaag
gggaaaacaaggccaccaagattgacccatctagagtcatcaattactcggcacaaagct
cacataatgaagttagagttgctattgagactgctggataatgatgagttgagtcccgag
caagttaatgatattaaggatttcttggacgactatgtggaacgaaatcaggaagatttt
gatgaatttgatgacgtggacatgctatacagcaccttaccgttggacaaggttgagtca
ctcgaagatctagttaccagcggtccacctggtcttgttaagggtgctggcgctactggt
gctggtttaagcataaaatctgcgttgtctccatcatcggctccgtctgtggccacaact
acaacatctattcaacagggagatacaacccaggagcaagttaatgatgcgggccctaaa
aacgcttcaatattgtctgcttccccaacaggaacccaagcaatccctgtaggttcaagt
tccgttaagggcattttggacaattcaacctcttccgtttctccctcttcgataaacatt
gcagccaagggggaagagatcggtcgaaaaccatctccagcccttcccgaatcagggtta
aggaatgttggtagaactggtgtgaccaatatacccgcaatctccataccagttaccgct
agtggtacggtttctagcagtgggtcccttggagtttcgttagaaacgccacggagagct
atgttaggagctgatgagagacttggtggtagtggaattgtgtcgccattggtttcttct
ttgaatagtagaatggtattgccgccaggtggcaaggccggtgatgctgttagcggcggt
gacagtggcagtaatggtgaggcggcaggggttacaagcagggtgttttcggcttctgga
gtttcaggcttacaatggaggcctggaagcccctttcaaagtcaacatgaagggattcat
agaagacctgaaattgtaccagaccaaagggagaattatttgcaacggttacaacacgtg
caacagggtcagggtaccctacttggcatgccttccctttctggtggaaatcataaacaa
tttactacacagcagaacccacttcttaaacagctcaactctcaaagttcagctgcatca
cctcaaggtgcaggccttattgttgccacatcagaacagcaaaaagaaagttcaatactc
ataccaacgggttcgaaagatactgtagatgaacctcagcaacatcaaaatcagttggat
gattctgtcacaagtaatgtgcttgacaaaaataccgccaatgaggatgtttcaaaggtg
tcatacacagtagatactcaggctggagtacctggctcagtgaccgaggcagataaagtg
acccgagatgtggatctctctcctggtcaaccattacagcctggtcaaactgctagcttg
ggggtgattggtagaagaagtgtgtctgaccttggtgcagttggtgacaaccccagtggc
ttaagttcgaccgtgggacccactcatgatcagcaatacatcttgcagttgctagagtct
tccttttacaagcttccacaacccaaagattctgaacgtgcaaagacttacattccgagg
caccctgctgtgacccctcaaagctatccccaagtgcaggctccgatcgttagcaatcca
gccttttgggaacgtcacggatctgataacactgggaccgatactctgttttttgcattt
tactatcagcagaacacgtatcaacagtatttagctgcaaaagaactgaagaaacaatca
tggagataccataaaaagttcaacacatggtttcaacgacatgaagaacccaaggttgct
accgatgattatgaactcggaacttatgtctactttgattttcacatgggcaatgaagag
atgcaacaaggctggtgccaaagaatcaaaaacgaattcaaattcgagtacagttttctt
gaagatgagctccttgtgtaa
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