Helianthus annuus (common sunflower): 110868501
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Entry
110868501 CDS
T05101
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110868501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110868501
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110868501
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
110868501
NCBI-ProteinID:
XP_021973362
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All DBs
Position
7:complement(123771447..123778846)
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AA seq
887 aa
AA seq
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MDQSITPSPQTPKKSPKAEALKQFSSLPSSISKLSGSSRGIPCNKDYHFYINFEEFKNPI
QEIGRNSQLILETIGSSAEWGKKQVKFPTCDDLDDDDDVYDWLVGFNDELFERFDASVDE
FRSLRNKEEETGVRVMNNVAADDGFQLVQGRKKKGVVVNNGNGNNVSGGNELGGSSSSSV
KVAVGTPKAKVPFHIASIRRPQDEYKILVNNANQPFEHVWLQRSEDGCRVIHPLEKLSVM
DFIDKTVSDVEPVKPSPVESTSFKLVQDVKDLKELAAKLRDANEFAVDLEHNQYRSFQGL
TCLMQISTRTEDFIVDTLKLRVQIGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGIYVC
NMFDTGQASKVLKLERNSLEFLLRYFCGVAANKEYQNADWRLRPLTAEMLRYATEDTHYL
LYIYDLMKKRLLSSSTDPDCPEAALVEVYQRSYDVCMQLYQKEILTENSYLNLYGLHAAD
LSGQQLAIVAGLFEWRDVIARSEDESTGYILPNKVLIEIAKQMPVTPGKLRHLLKSKLPY
IERNLGAVVSIIRHSMQNAVAFEPVAKKLKEEYIEMMAARNAKLANGEEATEAAGNESTS
NAVEDDSFEKEVGNFIVGANQNHKLDGSSASRVSIEVQKKPSRAFGSMFGNAAGKRKFNL
ESKATEEIKVEQIKSSVSLPFRSFTDKTEPSSHPVAKEPPRPQENPVLPLASEPETDVIM
LESDSDVEEEKEEKPAKDEEGSERKTEGENNVILLDSDCSDEENGEDKNGNEETMSLSDL
SSSFQKCVDTANETIQSDPVVEGGSTGLVEVKPFDYAAARKEGRFGEEGSGDEDGDGGKS
KGKGGRKKAGGGGGRKESAGGERSGDFQMGRRRQAFPATGNRSSTFR
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatccatcaccccatcaccccaaacccccaaaaaatcacctaaagcagaagcc
ttgaagcagttttcttctttaccctcttcaatttcaaagctttcagggtcttcaagaggc
atcccatgcaataaagattatcacttttacatcaactttgaagaattcaaaaacccaatt
caggaaattggtagaaactcacagttgatccttgaaacaattgggtcatcagcagaatgg
ggtaaaaagcaggtaaagtttccaacttgtgatgatcttgatgatgatgatgatgtgtat
gattggttggttgggtttaatgatgagttgtttgagaggtttgatgcttctgttgatgag
tttaggagtttgaggaataaggaagaggaaacaggtgttagggttatgaataatgttgct
gctgatgatgggtttcagttggttcagggtaggaagaagaaaggggtggtggttaataat
ggaaatggtaataatgtaagtggtggtaatgagttgggtggttcttcgtcgtcgtcggtg
aaagtggcggttgggacaccgaaggcgaaagttccgtttcatatagcgtcgatacggagg
ccgcaggatgagtataagattctggttaataatgcgaatcagccgtttgaacatgtttgg
ttgcagaggagtgaggatgggtgcagggtgatacatccattggagaaactttcagtcatg
gattttatcgataaaacggttagtgatgtagagcctgtaaaaccgtctccagttgaaagt
acatctttcaagctcgtacaagatgtaaaagacttgaaggagttagctgctaaactgcgt
gatgccaacgaatttgcggttgatttggaacacaatcaatatcgatcttttcaagggtta
acttgcttgatgcaaatatctacaagaacagaagattttatcgtggatacattgaaacta
cgggttcaaatcggtccgtatctgcgagaggttttcaaggatcccaccaaaagaaaggtc
atgcatggagctgatcgggatattatatggctgcaacgcgacttcggtatatacgtttgc
aatatgtttgatactggacaggcgtcaaaggtgttaaagttggagaggaattctctggag
tttctattgagatacttttgcggtgttgctgcaaataaagaatatcaaaacgcggattgg
cgattgcggccgttgactgctgaaatgctgaggtatgccacagaagacacacattatcta
ttgtatatatacgatcttatgaaaaaaaggttgctttcatcatcaacagatccagactgc
cctgaagcagctcttgttgaggtataccaacgcagttatgatgtatgtatgcagctctat
cagaaagagattctgactgaaaattcgtatctgaacctttacgggttgcatgcagctgat
ctcagcggtcagcaacttgccatcgttgcagggctttttgagtggagagacgtcattgct
cgttcagaagatgaaagtaccggatatatattgccaaacaaagttcttatcgaaattgca
aagcaaatgccggtgacacccgggaaattacgccacttgttgaagtcgaaactcccgtat
atcgagcgaaaccttggtgctgttgttagcattatcaggcattccatgcagaacgcggtg
gcatttgaacccgttgccaagaaactgaaggaagaatacattgaaatgatggctgcaaga
aacgctaaacttgctaacggtgaagaagcgacagaagctgcaggaaatgaaagtactagt
aatgctgtagaagacgactctttcgaaaaggaagttggaaactttattgttggagcgaac
caaaaccataaattagatggctcttctgcttcgcgagtaagcattgaggtgcaaaagaag
ccaagtcgtgcgtttggatccatgtttggaaacgcagcaggaaagagaaagttcaatctt
gaatcaaaggcaacggaggagatcaaggttgaacagatcaaatcttctgtgtcactcccg
ttccgttctttcactgacaaaaccgaaccttcatcacatcccgttgcgaaagaacccccg
agacctcaagaaaatccggttttgcccctagcttctgaaccggaaactgacgttattatg
ctggaatctgactccgatgttgaagaagagaaagaggaaaaaccagcaaaagacgaggag
ggtagtgagcggaaaacggaaggtgaaaacaatgtaatattgttggattccgattgttcc
gatgaagaaaacggtgaagataaaaatggaaacgaggagacaatgtcactgtcagatctt
tcgtcaagcttccagaagtgcgtagatactgctaacgagacgatacagtccgatccggtg
gtggagggcggttcaacggggttggtggaggtcaaaccgtttgactatgcggcggctagg
aaagaagggaggttcggggaagaggggtccggtgatgaagatggtgatggtggtaaaagt
aagggtaaagggggacggaagaaggcgggtggtggtggtggtcggaaggagtctgcaggc
ggtgaaaggagtggggattttcagatgggtaggcggcgccaagcgtttccggcgactggc
aaccggagctcaactttccggtga
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