Helianthus annuus (common sunflower): 110868785
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Entry
110868785 CDS
T05101
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
han
Helianthus annuus (common sunflower)
Pathway
han04142
Lysosome biogenesis
han04145
Phagocytosis
han04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
han00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
110868785
04142 Lysosome biogenesis
110868785
04148 Efferocytosis
110868785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
han04131
]
110868785
Membrane trafficking [BR:
han04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110868785
Hops complex
110868785
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_Vps41
zf-RING_11
zf_RING_Vps8
zf_RING_Vps8_fungal
zf-rbx1
zf-C3HC4
zf-RING_UBOX
Nup54_57_C
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
110868785
NCBI-ProteinID:
XP_021973734
LinkDB
All DBs
Position
9:183224000..183241350
Genome browser
AA seq
986 aa
AA seq
DB search
MEFKRQVFTVDLLERYAAKGHGVITCMASGNDVIVLGTSTGWLIRHDFGVGDSYDIDLSA
GRGDQSIHKVFVDPGGSHCIANVVGNGASETYYMHAKWPKPRVLTKLKGLVVNTVAWNRQ
QITEASTREVILGTDNGQLHEIAVDEKDKREKYVKFIFELSELPEAFKGLQMETASFNNG
TRYYIMAVTPTRLYSFTGTGSPEAVFASYADRAVHFMELPGDIPNSELHFFIKQRRAVHF
AWLSGAGIYHGGLNFGTQRGENFVENKALLDYSKLSDGGEVVKPSSIALSEFHFLLLIGN
RVKVVNRISEQIVEELYFDQTSESASKGIIGLSIDASAGLFYAYDENSIFQVSVTDEGRD
MWKVYLDLKEYAAALANCSDPYQRDQVYLEQAEAAFSARDFFRAASFFAKINYALSFEEI
TLKFIGIGEQDALRTFLLRKLDNIVKDDKFQIMMISTWATELYLDKINRLLLEDDSPEKR
SNSEYQSIVMEFRAFLSDSKDVLDEATTMKLLESYGRVDELVYFASLKEQYEIVIHHYIQ
QGEAKRALDVLQKPGVSVDLQYKFAPDLIMLDAYETVESWMTRKDLNPRKLIPAMMSYSS
EPHAKNETHEVIKYLEFCVHRLQNEDPGVHNLLLSLYAKKEDESALLRFLQCKFGKGRSN
GPDFFYDPKYALRLCLKEKRMRACVHIYSMMFMHEEAVALALQVDPELAMAEADKVEDDE
DLRKKLWLMVAKHVVEQEKGTKRDNIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKE
AICSSLEDYNQQIEKLKEEMNDATHGADNIRNDISALAQRYTVVDRDEECGVCKKVILPS
GADYRMARGYTTIGPMAPFYVFPCGHAFHAQCLVAHVTKCTNRNQAEHILDLQKQLTLMS
VEPKEGVNGGLNGALSGDDVATSVTPIDKIRSQLDDAIASECPFCGDLMISEISKPFVLP
EESYLVSSWEIMSKNVGIEKGIAFVV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaaagacaggtatttaccgtcgatcttctagaaagatatgcagcaaaaggt
catggagttattacttgcatggcatccggaaatgatgtcattgttctaggaaccagtact
ggatggctaattagacatgattttggtgtcggtgattcttacgatatcgatctctccgct
ggtcgtggtgaccaatccatccataaagttttcgttgatcccggtgggagtcattgtatc
gccaacgtagttggaaatggtgcttccgaaacatattacatgcatgcaaagtggcccaag
cccagggtgttgaccaaactaaaaggcctcgtggtcaataccgttgcctggaatcggcaa
cagataacagaagcttcaacacgagaggttattcttggtacggataatggtcaactgcat
gaaatcgctgttgatgagaaagataagagggagaaatacgtaaaatttatattcgaactc
tctgaattgccagaagctttcaaggggctacagatggaaacagctagctttaataatgga
actagatattatattatggccgttactccaacaaggctttattcttttacgggtaccgga
tctccagaggccgtctttgccagttatgcagatcgtgcagtgcattttatggagcttcct
ggagacataccaaacagcgagctgcatttcttcatcaaacaaagacgagcagtgcatttc
gcttggctttccggagctggtatttatcacggtggtctgaattttggaacgcaacggggc
gagaattttgtcgagaacaaagctcttcttgattactcaaagttaagcgacggtggtgaa
gtggttaaaccgagttcgatcgcactctcagagttccactttttgcttctaattggaaac
agggtgaaggttgtaaatagaatcagtgagcaaattgtcgaagaactttatttcgatcag
acatcagagtcagcatcaaaggggataatcggcttatccattgatgcatctgctggattg
ttctatgcatacgatgaaaactcgatctttcaggtgtctgtaaccgatgaaggccgagat
atgtggaaagtgtaccttgacttgaaggaatacgctgctgcgttggcaaattgttccgat
ccttaccagagagaccaagtatacttagaacaggccgaagctgctttttcagcccgggac
ttctttagagcggcatcattctttgctaaaatcaactatgcattgtcgtttgaagagatc
acattaaagtttatcggcataggtgaacaggatgcgttaaggacatttttattgcggaag
cttgataatattgtgaaagatgataaatttcaaataatgatgatatctacatgggccact
gaactgtaccttgacaagatcaatagattactgctggaagatgactcaccggagaagcgt
agtaattccgaataccaatctatcgttatggagtttcgtgcttttctcagtgacagtaaa
gacgtgttggatgaggctactacaatgaagctactcgaaagctacggtagagttgatgaa
ttggtatattttgctagtctaaaggaacaatatgagattgtcattcatcactacattcag
caaggagaggcgaaaagagccttggatgtacttcaaaaacctggtgtttctgttgatctt
cagtataagtttgctccagatctcatcatgcttgatgcgtacgaaaccgttgaatcatgg
atgacccgaaaagacttgaatccacgaaaactgattcccgcaatgatgtcttattcaagt
gaaccccatgcaaagaatgaaacccatgaagtaatcaagtatttagaattttgcgttcat
cggttgcagaatgaagatccgggtgttcataacctcttgctctctctatatgccaagaag
gaagatgaaagtgctcttttgcggttcctacaatgcaagttcgggaaaggacggtctaac
ggccctgatttcttttacgatcctaagtacgctcttcgtctttgcctcaaagaaaaacgt
atgcgtgcatgtgtacatatttacagcatgatgttcatgcatgaagaagccgttgcgctt
gctcttcaggttgacccagagctcgcaatggccgaagcagacaaagtggaagacgatgaa
gacttgaggaaaaagttatggcttatggttgccaaacatgttgtcgagcaagaaaaaggt
actaaaagagacaatattaggaaagcaattgcttttcttaaggaaaccgacggtctgtta
aagatcgaagatatcttacctttcttcccggactttgcactaattgacgacttcaaggaa
gcaatttgttcatctttagaggattacaaccagcaaatcgaaaaattaaaagaggagatg
aatgatgcaacacacggtgcggataatataagaaatgacattagcgcccttgctcaaaga
tatacggtcgttgaccgtgatgaagaatgcggggtttgcaagaaggtaattttaccttcg
ggtgctgattaccgaatggcgaggggttatacaacaattgggccaatggcccctttctat
gtgttcccatgcggacacgcgtttcatgcgcaatgccttgttgcccatgttaccaaatgt
accaatcgaaatcaagctgagcatatactggatcttcagaagcaactcactttaatgagt
gtggagcctaaggagggtgtaaacggtgggttaaatggtgcgttaagtggtgatgacgta
gccacaagtgtgacccctatcgataagattcggtcacaactagatgatgcaatagcaagt
gaatgcccattttgtggggatctgatgataagtgagatttcgaaaccatttgttttgccg
gaagaatcatatctggtttcttcatgggagattatgtccaagaatgttgggattgagaag
ggcattgcttttgtcgtgtaa
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