Helianthus annuus (common sunflower): 110872401
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Entry
110872401 CDS
T05101
Name
(RefSeq) uncharacterized protein LOC110872401 isoform X1
KO
K19026
spatacsin
Organism
han
Helianthus annuus (common sunflower)
Pathway
han04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
110872401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
han03400
]
110872401
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110872401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
110872401
NCBI-ProteinID:
XP_021976881
LinkDB
All DBs
Position
8:complement(23269299..23288519)
Genome browser
AA seq
3028 aa
AA seq
DB search
MTSSFGEEGPAIVQLHKWEPSCLQLNLTQFREAFLSPTRELILLLSYHHEALLLPLVKAG
VRVDDHHINFDPVDTNSLVGSNSYPMLSDINSLAWGICEDSNNDHEGASFRELLFVVGDH
GLTVHAFCQPSQCYESVEPTPDRQDDEGIWVEWGPSTSRDAMHLDKDDDNVENGEPRKWL
KTFLTKVKTVKTEGKLYSRFPDKSQFPSSTKVVSFNIFENDSTLLRFILNKNTELDPEGD
ENEINISYKCCRVFVNNSHDLIGFVLTCADESDRKQRKNVLVGKIVSWGIQWITSVKLDE
DVYTVPVDQWTDFKFLDKYLICLNSTGQIHFFGDITGEYMGCVNLLEKLSYQNNDIVGKS
VFRTLLVASRTSLLAAVDDYGIVYVTRASDLLSEINNTVEKPLPQFQQLKYRTLVGWEVG
GADISHQRLYDNLSPNIKFVTERSLSKDEIEDNESVITGFSAASQIVGHRTTDSTLRSIF
LPPDKYSKDDAICLSPFGITRLRRNRIIHFNLHLNSAVNDDTGSNIGREVTIADAVGCVF
HGCFYLVTADSLSVVLPSIAVASGCIPVEAIGFRQNNCRLTDQSVNLIEIKGLKQPWPTW
KLEVLDRVLLYEGHEEADHLCSENGWDLKVSRIRRLQLALDYLNFQEIEISLELLAGVSL
AEEGILRLVFAAVYLMLNKGGNDNDVSSASRLLSLGTRFSTKMIRSYGSLQHMQNEVMST
SISGMKDSSHPLLLADKEHNETENLRRLQEMAHLLEIIRNMQCRLATKFKKSVTRLGDGL
KPLEFVDSELSQDDPNVSSIETNEQERHALKSMESLDSRSYSDLESLGGASISQIETSLL
GRRGISFENPKDMIRRWDVDNLDQKEVVKDALLSGRLPLAVLKLHLHNQKGRDDNQELHD
TFEKVRDIGRAIAYDLFLKGEIELGVTTLQKLGEDLESCLRQLVFGTVRRSLRKQITEVM
KIHGYLGPYESKILEGISFIERVYPCSSFSGTFRARQKELMAVCDVNSPEEIKLSLLHSL
SDKLTIECGELDGVVLGLWRHVSKYPDVSVIDDDDDTHDSYWAAAAVWSDAWDQRIIDRI
VLDRLSVMDLNVSWESQFEYHISHSKWEEASRLIDIIPSYSSSHGNLRISLDGIPSTSAG
IKSEFGDYGNYIYSIQDLDAVYTDVPDIKILRFPSINTSSIWLKSLVESQLAKKFIFLKE
FWEGTEELVCLLARSGFVTNSSDISLPTEKSTNESTELYLINVDDVISDASFQGLHKLFL
HHCIQLNLPYLLDLYLDHHKLAIGLDLVSTLLEAAGDCQWAKWLLLSRVKGSEYEASFSN
ARAVASHNFASGNTLGAVEIDDIIHTVDDIAEGAGEMAAIATLMYAPVPIQDCLSTGSVD
RNRSSSAQCTLENLRPAIQRYPTLWRTLVAACFGQDPTCNYLSSRSKVFGNSYLSDYLNW
RDNIFYSAGLDTSLEQMLPGWFSKAVRRLVQLYVQGPLGWQSVPGMPMEESFLLRDVDYV
DNGNEQIKITTLSWEAAIQRHVEELYGPSLEGSRLGLEHHLHRGRALAAFMHLLSLRVKK
LKLEYETRRVPSDTSVNGQSNIQSDVHTLLSPITPEEESLLSSVMPLAVMHFEDSVLVAS
CAFLLELCGLSPSMLQVDVAALRRISSFFKSIDHTDNSVQPSFKGSAFLEGDITGSMARA
LAEYYLKHYNTGVMREKDKDKDSSTNGKQANRALVLVLQNLEKASLPSLVSGETCGSWLM
SGNGDGADLRAQQKAASQHWSLVTEFCKMHQIPMSTKYLAVLAKDNDWVGFLSEAQVEGH
PFDTVIQVASKEFSDPCLKVHITTVLKGMQSRKNSPSSSNFNTTNKKNESSFLEDNNYIP
VELFGIIADCEKQKNPGETLLLKAKDLCWSVLAMVAACFPDVSALCCLTVWLEITAAREI
TSIKVNDIASQISSNVAAAVDANNLLPVTARAQTLHYNRRNPKRRRLMESWPNDTLTSKG
SDASTASSNTSIFIDQGIIFGGESKETTDENKVSTESDKVFNSLSKMVAVLCEQRLFLPL
LRAFEMFLPSCSLLPFIRALQAFSQMRLTEASAHLGSFSARIKEEHNSIQTSTKDGPIGG
SLVSVAEKASDAMLMTCPSPYEKRCLLQLLSATDFGDGGSLMSHYRRLYWKISLAEPLLR
KDDVLLLGNESLDDASLLTALETNGYWEQARNWAKQLEASGGPWKSATHHVTETQAESMV
AEWKEFLWDVPEERVALWGHCQMLFVRYAFPPLQAGLFFLKHAEAVDKDLPPKELHELLL
LSLQWLSGMITQSAPVYPSHLLRELETRVWLLAVESEAQVKSEGELTLNTTSRDAGYGKG
SSIVDHTASVVSKMDTHINTMKTKNDHHRSPHVIESTTSTSTKSKRRAKAVVSSRKPFVD
AEKVSESEDISVPNNLEVDSKSTEVSFSRWEESIGPAELERAVLSLLEFGQISAARQLQH
KLSPSRFPSEFTLVDAALKLAAISTPSNKVAISMLDDEVRSVIQSYNLPTDHQFVDPMQV
LESLTTFFVDGRGRGLCKRLISVVKAANVLGLTFSEAFDKQPIELLQLLSLKAQDSFEEA
HLLIQTHSMPAASIAQILAESFLKGLLAAHRGGYIDSQKEEGPAPLLWRFSDFLKWAELC
PSESEIGHALMRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVALAATRVDAYV
SEGDFPCLARLITGVGNFHALNFILGILIENGQLELLLQKYSAVTDTHTGTAQAVRGFRM
AVLTSLKQFNPNDLDAFAMVYNHFDMKHETASLLESRAEQSYHMWFSRNNKDHTEDLLES
MRYFIEAAEVHSSIDAGNKTRAACASASLVSLQIRMPDFQWLSLSATNARRALVEQSRFQ
EALIVAEAYGLNQPGEWALVLWNQMLKPELTEQFVAEFVAVLPLHPTMLAEIARFYRAEV
AARGDQSQFSVWLTGGGLPAEWAKYLERSFRCLLKRTRDLRLRLQLATVATGFADVIAGC
LKALDRVPDNGGPLVLRKGHGGAYLPLM
NT seq
9087 nt
NT seq
+upstream
nt +downstream
nt
atgacttctagctttggtgaagagggccccgctattgtgcaattgcacaaatgggaacct
tcttgtttgcaattgaacttgacacagttccgtgaagctttcctttccccaaccagagaa
cttatattgttactttcatatcaccatgaagctctacttcttcctctagtcaaagcaggt
gtaagggtggatgatcatcacatcaatttcgatcctgtagatacaaattcacttgtagga
tctaatagctatcctatgctttctgatataaattcacttgcttggggtatatgtgaggat
tcaaataatgatcacgagggggcttcatttagagaacttttatttgtggttggagaccat
gggttgaccgtccatgcattttgtcaaccgagtcaatgctatgagtctgttgaacctacg
ccagatcgtcaggatgacgaagggatatgggtcgagtggggtccatctacctcaagagat
gcaatgcatctagataaggatgatgataatgttgaaaatggtgaaccaagaaagtggttg
aaaacgttccttacaaaggtcaaaacagtcaaaactgaaggtaaactttatagcagattt
cccgacaagtcacagttcccatcctcaactaaagttgtttcctttaacatttttgaaaat
gattctacacttctgaggttcatattaaacaagaatactgaattagatcctgagggggat
gaaaatgaaataaacatttcatacaaatgttgtagagtgtttgttaacaattcacatgac
ctaattgggtttgttttaacatgtgctgatgaatccgatagaaagcagagaaaaaacgta
cttgttggtaagatagtcagctggggcatacagtggatcacctcagtgaagcttgatgag
gatgtatatacggttcccgttgatcaatggacagacttcaaatttttagataaatatctt
atatgccttaattctaccggccaaatacattttttcggtgatataactggtgaatacatg
ggatgtgttaatcttttagaaaagttgtcttatcaaaacaatgatattgttggtaaaagt
gtgtttaggacacttcttgttgcttcgcgtacctcattgttggctgcagttgatgattac
ggtatagtttacgtaacgcgtgcgagtgatcttctttcagaaataaataacacagttgaa
aaaccactgccacaatttcaacaactgaagtacaggacattggttggctgggaggttggt
ggtgctgacatcagccaccaaaggctatacgataatctttctccgaatataaaatttgta
acggaaagaagtctttctaaggatgaaattgaagataatgagtcggttattaccggtttc
tctgctgcttcacagatagtgggacataggaccaccgacagtaccttacgaagtatattt
cttcctccagataaatatagcaaagatgatgctatatgtctttctccatttggaatcacc
cgtcttcgtagaaatagaattattcatttcaacttgcatttaaactcagctgtgaatgat
gatacgggatcaaatataggtcgggaagtaactatcgctgatgcggttggttgcgtgttt
catggatgtttttatttggtgacagcagattctctttcagtagttctcccttcaatcgct
gtagcttctggttgtattcctgttgaagccattggattccgccagaataattgccgctta
acggatcaaagtgtaaatcttattgaaataaaaggattgaagcagccctggccaacttgg
aaattggaggttttagatagagtccttttatatgaaggtcatgaagaggcagatcattta
tgctcggaaaatggatgggacctgaaggtttctcggattcgtcgcttgcaacttgcatta
gattacttgaactttcaggaaatcgagatatcattagagctgctcgctggtgtgagctta
gcagaagaaggcattctgagattggtctttgctgccgtttatttaatgttgaacaaaggt
ggaaatgataatgatgtatcttctgcatcaaggcttttgtctttgggcacccgtttttct
accaaaatgatacgtagctatggatcattgcagcatatgcaaaatgaggttatgtcaaca
agtatttcaggaatgaaagattcttctcatccgttgcttttagcagataaagaacacaat
gaaactgaaaatttgagaaggcttcaggaaatggctcacttgttggagattataagaaac
atgcaatgtcgtcttgctaccaaatttaaaaaatctgttacacgattgggggatggttta
aagccactggaatttgtggattcagaactatcacaagacgatccaaatgtctcatcaatt
gaaacaaacgagcaggaaaggcatgctttgaaatcgatggaatcacttgactctagatca
tattcagatctggagagcttagggggggcatctatttctcaaatagaaacaagtcttctt
ggaaggagaggcatttcatttgaaaatcctaaggatatgattagacgttgggatgtagat
aatttggatcaaaaagaagtcgtgaaagacgcgttactttctggtcgtcttccattagcg
gtccttaaattgcatcttcataatcaaaaaggaagggatgacaaccaagagcttcatgat
acctttgagaaagttcgtgatattggaagggctattgcttatgatctgtttcttaagggt
gaaatcgaacttggtgtgacgacacttcaaaagcttggagaggacctggaaagttgtctg
aggcaattggtttttggcactgtaaggagatctctcagaaagcaaataaccgaagtgatg
aaaattcatgggtatcttggaccatacgagtcaaagatattggaagggatatcatttatt
gagagggtgtacccttgcagtagcttttccggaacattccgtgccagacagaaggagttg
atggcagtttgtgatgttaattcaccagaagaaatcaagctttctttgttgcattcacta
tccgataaacttacgattgagtgtggtgaacttgatggggttgtgctaggtttatggaga
catgtcagcaaatatccagatgtttccgttattgatgatgatgatgacacccatgattct
tactgggctgcagctgccgtatggtctgatgcttgggatcagagaattattgatcgtata
gtgctagaccgactttcggttatggatctcaatgtatcatgggagtcacaatttgagtac
cacatatcccacagtaaatgggaggaagcttccagactcatagatatcattccgtcatat
tcatcatcacacggaaatcttcgaatcagtttggatggtataccaagcacttccgctgga
atcaaaagtgagtttggtgattacggaaactacatatattctatacaagatttggatgct
gtgtacacggatgtcccagatattaagatactaagattcccatccattaatacatcctcc
atatggttgaaatcacttgtggaatctcaactcgcaaagaaattcatatttctcaaagaa
ttctgggagggtactgaggaattagtatgtcttctagcgcggtcaggctttgtcacgaac
tccagtgatatatctcttcctactgagaagtcaacaaacgagtcaaccgagctgtattta
ataaacgttgatgatgtcatcagtgatgcttcttttcagggtctgcataagctttttctg
caccattgtattcaacttaacttgccatacctactcgatctttaccttgatcaccataag
ttggctataggtcttgatcttgtttctacccttcttgaagctgctggagattgtcaatgg
gcaaaatggttacttttatcaagggtcaaagggagcgaatacgaggcatcattctcaaac
gctcgtgccgttgcatcacacaatttcgcttctggaaatacccttggtgcagttgaaatc
gatgacataattcatacagttgacgacattgctgaaggagcaggtgaaatggcagctata
gccacattaatgtacgcacctgttcctattcaagattgcttgagtactggtagtgtggat
aggaaccgaagctcttcagctcagtgtacgttagaaaatcttaggccagctatacaacgg
tatcctacactatggcgcacgttagtagcagcatgttttggacaagatccaacttgcaat
tatttaagttccagatcaaaagtctttggaaattcttatttatccgactatctgaactgg
cgtgacaatatcttttactctgctggacttgatacttcacttgaacaaatgctcccggga
tggttctctaaggctgttcggagacttgttcaactttatgtgcagggtcctcttggttgg
caatctgtaccggggatgccaatggaagaatcttttctccttcgagacgttgattatgta
gataatggtaatgagcaaattaagattaccacattatcttgggaagctgctattcaaagg
catgttgaggaattatacggtccttcattagagggatctagacttgggcttgagcatcac
ctgcatcgtggacgtgccttggcagcttttatgcatcttctatctttaagagttaaaaag
ctaaaattggaatatgaaacacgcagagtgccttcagatacatcagtaaacggtcaatca
aatattcaatccgatgttcatactctactttctccaataacaccagaggaagaatctctt
ctttcatctgtcatgccacttgcagtcatgcattttgaagattcagtgttagtggcatcc
tgtgcttttcttctagagctatgtggattgtctcctagtatgcttcaagtggatgttgct
gccctgaggcgaatatcttctttctttaaatctatcgatcacaccgataattctgtgcaa
ccttcatttaagggctctgcgtttctcgaaggtgatatcaccggttcaatggctcgagcg
ttggccgaatactatttaaaacactacaacaccggtgtaatgagggaaaaggataaagat
aaagatagtagcactaacggtaaacaagcaaatcgtgcacttgtgcttgttcttcagaat
ttggagaaggcaagtctcccgtcattggttagtggagaaacatgtggatcttggctaatg
agcggaaatggtgatggagcggatttgagggcacagcagaaagctgcgagtcagcattgg
agtttggtaacagaattttgtaaaatgcatcagatacccatgagtacgaaatatttggcg
gttttagctaaagacaacgactgggttggatttctctcggaggctcaggttgaaggacat
ccttttgacacggtgatccaagtggcttcaaaggagttcagtgatccttgtctaaaggtt
catattacaacagttctcaaaggcatgcaatcaaggaaaaactccccttcgtcctcaaac
ttcaataccacaaataaaaagaacgaatcttcttttttggaggataacaattatattcca
gttgaactctttggtatcatagctgattgtgaaaagcagaaaaatcccggagagaccctc
ttgttaaaagcaaaggatttatgctggtcagttttagcaatggttgccgcatgctttcca
gatgtgtctgcattatgctgcctaacagtttggcttgagataacagcagcaagggagata
acatccatcaaagtgaatgatattgcttctcaaatatctagcaacgttgcagcagctgtg
gatgctaacaatttattgccagtgactgctagagcccaaacacttcattacaaccgcagg
aaccccaaacgaaggcggcttatggagtcttggcccaatgatacattaacttcaaagggg
tctgatgcatctactgcttccagtaacactagcatattcattgatcaaggaatcattttt
gggggagaaagcaaagaaaccactgatgagaataaggtttcaacagaatctgataaagtg
tttaattctttatctaaaatggttgctgtactctgtgagcaacgtctgtttcttcctttg
ctgagagcgtttgaaatgttccttccatcttgttcactattgcccttcatccgtgctctt
caggccttctctcagatgcgtctaacagaagcgtctgctcatctaggatcgttttctgct
agaatcaaggaagaacataacagcatacaaacttcaacgaaagatgggccaattggtggt
tcattggtttcggttgctgaaaaagcttctgatgcaatgctgatgacatgtccatcacct
tacgaaaaaagatgcttattgcaactattatccgccaccgattttggtgacggtggatct
ttaatgtcgcactaccggaggctgtattggaaaatcagtttagcagagcctttgttacgc
aaagatgatgttttacttcttgggaatgaatctttggatgatgcttcacttttaaccgct
ctagaaacaaatgggtactgggaacaggcacgcaattgggccaaacagttggaggctagt
ggtggaccatggaagtcagctacacatcatgtgactgagacacaggctgaatcaatggtg
gctgagtggaaagagtttctttgggatgtacctgaagagagagttgctttgtggggccac
tgccagatgctttttgtcagatatgcttttcctccattacaggctggattatttttcttg
aaacatgcagaagcggtagacaaagatcttccaccaaaagaactccatgagttgttgctt
ctttctctccagtggctaagtgggatgataactcaatctgctccagtttatccgtcgcat
ctgttgagggagcttgaaactagagtatggctcctggcggtagaatcagaagctcaggtt
aagagtgaaggggagttaacgttaaacactaccagtagagatgctggatatggaaagggg
tcaagtattgttgaccatactgcaagtgtcgtatcaaaaatggacactcatattaacaca
atgaagacaaagaacgatcatcacagaagcccacatgttatagaatcaacaacttccact
agcacaaagtcaaaacgtagagctaaagccgtagtgtcatcaagaaagccttttgttgat
gctgaaaaagtttctgaatctgaagatatttctgttcctaataatctggaagttgactca
aagtcaacagaagtatctttttcgaggtgggaagaaagcattgggcctgctgagctggag
agggctgttctttctctgttggagtttggacaaatatcagctgctagacagctccagcat
aagctatctccttcacgttttccgtctgaattcactcttgtagatgcagctttgaagctt
gctgccatctcaactcctagcaataaagtagcaatttccatgttagatgatgaagtgcgt
tctgtgattcagtcatacaacctgccaacggaccatcaatttgttgatcccatgcaggta
ttggagagtttaacgacctttttcgtcgatggtagagggcgtggattgtgtaagagattg
atatctgttgtaaaggctgcaaacgtattgggtctcacattttcagaggcatttgataaa
cagccaatcgaactgctacaattgctatctctcaaagctcaagattcatttgaggaagca
catcttttaattcaaactcattccatgccagctgctagtattgctcagattctcgcagaa
tcttttttaaagggcttattagcagcacaccgtggtggatatattgattctcagaaggaa
gaaggccctgctcctttattgtggagattttcagatttcctgaagtgggctgagctgtgt
ccatcagaatcagaaattggtcacgcattgatgcgtttagtgattaccggacaggaaatt
ccacatgcctgtgaggttgagcttcttattctctcacaccacttctacaaatcatctgct
tgccttgacggtgttgatgttcttgtggccttagcagcgaccagagtagacgcgtatgtt
tccgaaggtgatttcccatgtttagctcgtttaataactggtgtcggcaatttccatgcc
cttaatttcatactcgggatccttatcgaaaacgggcagctggaactgcttcttcagaag
tactcagccgtcaccgacacccacactggcaccgctcaggctgtcagaggattccgtatg
gctgttcttacatcactgaagcaattcaacccaaatgatcttgatgcatttgccatggtg
tataaccactttgatatgaagcacgaaaccgcttcccttctggagtcacgtgctgagcaa
tcgtatcacatgtggttctctcgtaacaacaaggatcataccgaagacctcctagaatct
atgagatacttcattgaagctgctgaagttcattcttccattgatgctggcaacaaaacc
cgagcggcttgcgcaagcgcgtctctcgtttcacttcagatccgtatgcctgacttccag
tggctcagtttatccgccactaatgcccgacgggctctcgtcgaacaatcccgttttcaa
gaagctctaattgttgctgaagcgtacgggcttaaccagcccggtgaatgggccctggtg
ctttggaatcaaatgttgaaacccgagcttacggagcagtttgtagcggagtttgtggca
gtcctccctctccaccccaccatgcttgcggaaatcgcgcggttttacagagctgaggtg
gcagcacgtggggaccagtcgcagttctctgtttggttgacaggtggaggattacctgca
gaatgggccaagtatttagagagatcatttagatgtttgttaaagaggacaagggattta
cggctgaggttgcagttggcgacagttgccacaggctttgctgacgtcattgcgggctgc
ttgaaagcattggatcgagtcccggacaatggggggccacttgtgttgaggaaagggcat
ggcggggcctaccttcctcttatgtaa
DBGET
integrated database retrieval system
