Helianthus annuus (common sunflower): 110872433
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Entry
110872433 CDS
T05101
Name
(RefSeq) probable pectate lyase 18 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han00040
Pentose and glucuronate interconversions
han01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
han00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110872433
Enzymes [BR:
han01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
110872433
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
110872433
NCBI-ProteinID:
XP_021976917
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Position
8:24358649..24361829
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AA seq
582 aa
AA seq
DB search
MSPCACTSLLTYMLYLTCISSTFIRVTLPHQHPDPEAIVLQLQRKVNASIASRRQLLETN
PLYIQSKDQTPCQTGNPVDDCWRCDPNWANDRQRLADCAIGFGQGAMGGKGGQIYIVSDP
SDGDPENPQPGTLRHAVIQSEPLWIIFARDMHINLKTELIVSSAKTIDGRGAIVHITGKG
CIVIEHVGNIIIHGLYIHDCEPSGNAKIRVSPTDVVGRGKSDGDGLTIKGVRNLWIDHCS
FARCKDGLVDITEGSTAVTVTNSYFTEHDKVMLLGHSDDYLADAGMQVTVAFNHFGKGLV
ERMPRCRHGYFHVVNNDYTEWQLYAIGGSAAPTINSQGNRFVAQPNSHKEVTKRMEAKED
EWRGWNWRTEGDLMVNGAFFTPSGAEFSVQYDKASSVPAMSAYLINQLTMHAGVLVGVPS
NVGDNPPPGIIPPGGDGGGGPPMIIPPVDGQPSGGNPPGTIPPDGGDYGYSPSTIPPGGN
RYGATPPGCYAPGKTQGGCIPGGGGDPGMVSGVGYSSVPGSPPFGVLQGCGPGIIPYCGG
PGGRMVSGVGSSIHTMTRSSILTSMLLSSLVVLSTSVVFSLQ
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtctccatgtgcatgcactagtctcttgacctacatgctttatttaacttgtatatcc
tccacttttattagggtcaccctccctcatcaacaccctgacccagaagctattgttctg
caactacaaaggaaagttaatgcttcaatagcctccagaagacaactacttgaaacaaac
ccattatacattcaatcaaaagatcaaactccttgccagaccgggaacccagtcgacgac
tgctggcggtgtgacccaaactgggccaatgaccgccaacgcctcgccgactgcgctatc
ggatttggccagggtgcaatgggtggcaaaggaggccaaatctacattgtctcagaccca
tctgatggagaccccgaaaaccctcaacccggaacactaagacatgctgtcatacaatcc
gagccactatggatcatattcgcgcgtgacatgcacataaatttaaaaaccgagctcatt
gtcagcagcgcgaaaaccatcgatgggcgtggggccatcgtgcacatcactggaaaaggg
tgcattgtgattgaacatgtgggaaacatcatcattcatgggctttatattcatgactgc
gagccatcggggaacgctaagataagggtgagtccaacagatgttgtgggcagagggaaa
tccgacggtgatggattgacaatcaagggggtacggaatttgtggattgatcattgttct
tttgccaggtgtaaagacggattggtcgatatcacagaaggatctaccgccgtgacagtg
accaattcttattttacggagcatgataaggtcatgttattgggtcattctgatgattat
ttggctgatgctggtatgcaggtgacagttgctttcaaccactttggaaaagggcttgtg
gagagaatgccaagatgcagacacgggtatttccatgtcgtaaacaatgactacactgaa
tggcagttatatgccattggtgggagcgcggctcccactattaacagtcagggcaacaga
tttgttgcccagcctaattctcataaggaggtgacgaagcgaatggaagcgaaggaagat
gaatggagggggtggaattggaggacggaaggggacttgatggttaatggtgcatttttt
acgccctcgggtgctgagttcagtgttcaatatgacaaggcgtctagtgttccggcgatg
tcggcttaccttataaaccaactaactatgcatgcaggtgtcctcgttggcgtcccaagc
aatgtaggtgacaatccacctcctgggatcataccacctggtggcgatggcgggggcggt
cctccaatgattattccaccagttgatggtcaaccaagtggtggcaaccctccaggtaca
ataccgcctgatggtggtgattatggctactctccaagtacaatacctccaggcggcaac
cgttatggagccacaccaccaggttgctacgcgcctggaaaaacacaaggcggttgtatt
ccaggtggtggtggtgatcctgggatggtgtcaggtgttgggtacagttcggtaccagga
tccccaccgtttggggtgctacaaggttgcgggcctgggataataccttactgtggcggt
cctggcggcagaatggtttcaggtgtaggtagcagcattcatacaatgacacgttcatca
atattaacctccatgcttctgtcttcactagttgtattatctaccagtgttgtattctca
ttacagtag
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