KEGG   Helianthus annuus (common sunflower): 110877795
Entry
110877795         CDS       T05101                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03018  RNA degradation
han03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110877795
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110877795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110877795
   03041 Spliceosome [BR:han03041]
    110877795
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110877795
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110877795
Spliceosome [BR:han03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110877795
SSDB
Motif
Pfam: LSM SM-ATX SICA_C
Other DBs
NCBI-GeneID: 110877795
NCBI-ProteinID: XP_021981690
LinkDB
Position
9:55140965..55144539
AA seq 154 aa
MLPLSLLKTSQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKNRMDRKPPGVGRGRGRGGRDDVGGGRKQGRGGGMGG
RGGSMDDGGGGRGRSQGVGGYPGGNRGGGRGGRG
NT seq 465 nt   +upstreamnt  +downstreamnt
atgcttccgttatcgcttctcaagacatctcaagggcatcctatgcttgtggagcttaaa
aatggtgaaacttacaatgggcatttagtaaactgtgacacctggatgaatatccatctt
cgtgaagtaatctgtacttcaaaggatggtgataggttctggaggatgcccgaatgttac
atccgcggaaacactataaagtatcttcgtgtgccagatgaggtgattgacaaggttcag
gaagaaaccaagaaccgcatggatagaaagccacctggggtaggacgtggaaggggaaga
ggcggtagggatgatgttggcggtggcagaaagcaaggaagaggcggcggcatggggggg
cgtggcggcagcatggatgatggaggaggtggtagaggcaggagccaaggagtaggaggt
tatcctggtggcaacagaggtggaggccgtggtggtcgtggatga

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