Helianthus annuus (common sunflower): 110877967
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Entry
110877967 CDS
T05101
Name
(RefSeq) uncharacterized protein LOC110877967 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110877967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110877967
03019 Messenger RNA biogenesis [BR:
han03019
]
110877967
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110877967
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110877967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
GNAT_acetyltr_2
Ly49
DUF6315
Motif
Other DBs
NCBI-GeneID:
110877967
NCBI-ProteinID:
XP_021981897
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All DBs
Position
9:complement(86037056..86043045)
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AA seq
496 aa
AA seq
DB search
MNPHNNSNQNPASTSGVEQVMNQQMFSCNMPVVAPPFPMQTATGPFPNSIRGFTPQQNLI
PFPVNQFNPVQQQQVLVQNTIQNIYQLLQLQNSNYAQCPPGSFPVFQNPGFPMNQQFVMA
GPQTIGQQLQGNPFLPAASGSVQPHNFQNQIPQGVGPQNPNLFPNQMFGIPSLNGPLQNV
NQGQPGFVSPRQILNTGQTHNPSPTPKNFEDNHKSGPTNVNGGWTEGQHKKFTGHKTYDP
SQKGSKIHKHAKQKFGSYKGNMNKAEGGSNLEVDSVSRNFTNFEKRVPSLTYTEQEIKVW
REARKKNYPTNGAVLEKHKKEETLSDVTNQDAVLRRQQLKEILTKQAELGCEVAEIPVSY
LSSPDKQNPRERKRERQQRYKKGKFNNKRRTSFQDADRMTKKTRPGDEDSFKGNHQTKQN
KREPSLLQKLLTRDVKRDKTHLLQVLRFMTANSFFTTESLKFPPVVVRETNVDVPSIETT
CSVVKGEEEEEGEIID
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcataacaattccaatcaaaatccagcatctacttctggggttgaacaggtc
atgaatcagcagatgttcagctgtaatatgccagttgtggctccaccctttcctatgcaa
actgccactggtccatttccaaacagtattcgtggattcactccgcagcagaatttaatt
ccgtttcccgtaaaccagtttaatcctgttcagcaacaacaggttcttgtgcagaacaca
atccaaaatatctatcagcttctccaattgcaaaactccaattacgcacaatgtcctcct
ggtagttttcccgtgttccagaaccctggatttcctatgaatcagcagtttgtcatggcc
gggccgcagactatcggccagcagttgcaagggaacccgtttttacctgctgcttctggg
tcagttcaaccacataatttccagaaccagattcctcaaggcgtgggccctcagaatccc
aacttgtttccaaatcagatgtttggcatccctagtttgaatggccctttgcaaaatgtt
aatcaaggacaaccgggatttgtttcgcccagacagatactcaatacgggtcaaacacat
aatccctctccaactcccaaaaattttgaggacaatcataaaagcgggcctaccaatgtc
aatggcgggtggactgaaggtcaacacaaaaaatttacagggcataaaacatatgatccc
tcacaaaagggatccaagatccataaacatgcgaaacagaagtttgggagctacaaagga
aatatgaataaagcagagggtggcagcaatttggaagtagattcggtgtctcgaaatttc
accaactttgaaaagagagtaccctctctgacttacacggagcaagaaataaaggtgtgg
cgtgaggctcgtaagaagaactaccccacaaatggggccgtattagagaagcataagaaa
gaagagacattgtctgatgtcaccaaccaagacgccgtgttacgtcgccagcaattaaag
gaaatattgacaaaacaagccgagttgggttgtgaagttgcggaaattccagtgtcttat
ttatctagtcctgataaacaaaaccctagagagagaaaacgcgaaagacaacaacgctac
aaaaaggggaagtttaataacaaaagaagaacatcatttcaagatgctgaccggatgacc
aaaaaaacaaggccgggggacgaagattccttcaagggcaatcatcaaaccaagcaaaac
aagcgagaaccatcacttctacagaagctattgacacgtgacgttaagagagacaaaact
catctcttgcaggttttaagattcatgacagcaaactcgtttttcactacggaatctttg
aaattcccacctgtcgttgtgagagaaacaaatgttgacgtgccctccatagagacgaca
tgttctgttgtaaagggagaggaggaggaagaaggagaaatcatagattaa
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