Helianthus annuus (common sunflower): 110878333
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Entry
110878333 CDS
T05101
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110878333
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110878333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
110878333
NCBI-ProteinID:
XP_021982311
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All DBs
Position
9:complement(118510697..118528238)
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AA seq
1831 aa
AA seq
DB search
MDSYNHLQERTRLPQPSLQKLAVISIFEKLRSSTALTGPDSDPTHAIAQCLNSNSPAVVD
QSVRELCVLVKDSKLEVSRALVELQSALEGSDSRFVNVFVKAIGFLVRLGFQNDNVSFQF
QSSEAHPFVKILSSRTEVQSELVRQVLLFITQNRHLGMEGVCEFLRPFLNFLVIQMSSSA
TTSSFARNLLSSIASLCCSFSQDAIPVFKLLMGCFKYIRCNSAEDVTNVSYLMGTIVDAF
VAVLTQLAGNGVLIHEAQLSGAELLEMVFSLCTDIHKYSGGEECIFDMSRRLIVVQAELD
LKCIPEASSVMLSLFVSLIQSELEHIQLSILKLVLDLIKWKNRNEAVVDVHEEILFVFPA
INLMSSPSKYVKEAASELLIILRKLSASFLVTPINELLMEERFPRVSRLEDIIFRVFRHL
WFQDQNFISDSFYLQRLLVGHKVVEEKQNSVQTWTVATTEYCKRMVEIKKSSLPKSQANE
IFLHEILPLLGAIASILIVHPTLGDSAVELLAVTGNMDPTLGVPLFLVILFYHNIFSGKS
EEIDFHDKLHLLQLKLLRMLPSLVSHPAMIPLVVQTILPMLQKDANPVLYATALRLLCKT
WEINDRVFGSLQGLLLPEAFTLFKYERSICISTAVTIRDVCQKNPDRGVDIILSVEACIE
STDAIIKALGIQSLSLLCEADVIDFYTAWGVIAKYVSSYSTDPVVAKNVCLLLRWGAMDA
EAYPEYATGVMQIIWEVATSKHPSHVSSWANARASAFEALTRYEVPHIRQFITDFREKNT
EALVSEIDPKVLEAMEKFETKIITHEHITRRRLVKEKRAPANKIEKLLDVFPRVIGLSGT
NNKVRELPGAALFHLSFSAKDKNNQGGSKALHDLHGRYENALVEIAASLQLSRNTVVALL
SLQSWKPFLQRWLRGCITLLDVKASSSVLDTTSKAADDILMRMTQTAMKSIPRSAENIGL
AVGALCLVLPPSAHATKASASKFLLSWLFQHEHEYRQWSAAISLGIISSCLHVTDHKQKS
QTINALLEVACMSKSTLVRGACGVALGYSCQDLLTRFQAGDDYEMHETELLGKIIRTLCR
LIDQYAQFSTTTLQTLSEYFPQVTNTTDPYITPSFSNKSSDYVEEDIWGVSGLIIGLGSS
VTAIYRSGRIDAAKKIKNLITSWIPLENRSKPVLSTGACLAIPFVVSFSQKVELIDGAEL
EYLASGYRDLINELVSTKKSGAFRQSLLMASCVGAGNFLGCVLNEGIHSLDATCVRELLD
IFKKIYSSSQPPLLHLGAMLGVVNALGAGGGTLFLHCPLSFSSSNSKHKESSYVTGPLFS
NSVMELSLTSLIQDIFLVAQNSDDNQLQHYASWAVSFLRHYIWSSDLHNEDRSKPNSASQ
PFPEDSVVMKLSLWLMNLNGSVIATPSHANTVATVLRCLTNAPRLPQLDWGPIIRRCMRY
EEQVSETSQGEYNLENRKLREECLVFSLVHGSNFDALLTFLDELFDLSRFKMLEMNLQLC
ILSHLPHTLKIFSGSRLEKLFDDVANFVQSPFSSDKVYDPELKSLLRTSCWKGVCLCFEE
AYLDSEKLMPNFENYMELLFTLLPEFSGLRFLEYGGTYEMEEWSEAVRCLGKAPLHWLLH
LLQIPETSFNQESHQFLDAKKKMIARARLVENGSIPLIELSKLKPYILNIRSDGIWDVLV
EVVMALQHAEGSVKRQWLVSAAEISCVTNYPTTAMQFIGLLCGSWSKYMPLLIVNPHIVL
SDLPVTLTSLLLDDTNWAVVADSVVSLMWTSTKRIYDYVTNTNDFSTQGSLDDSEKDTGV
FLLKVMHHTCVAFKDHLSPEERLMLANLTVP
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggactcatataaccatcttcaagaaagaactcgtttaccacaaccatcactccaaaaa
ctagcggttatctccatattcgagaagctccgatcatctactgctctcaccggacccgat
tccgacccgacacacgccattgctcaatgcctcaactcaaattcaccggcggttgttgat
caatcggttcgtgaactttgtgttctcgtaaaggactctaaattggaggtttctagggcg
ttagtggaactccagtcggctctcgaaggctctgattcgcgttttgttaacgtgtttgtt
aaagcgatagggtttctcgttcggttagggtttcaaaatgataatgtttcgtttcagttc
cagtcttctgaggctcatccttttgttaagattctttcttcccgaacagaggttcaatct
gagctcgtgcgacaggtgcttctatttattacgcagaataggcatttgggaatggaggga
gtgtgtgaattcttaagaccgttcttaaactttttggtcatacaaatgtcatcatcagcg
acaacgtcttcatttgcaaggaatcttttgtcctcgattgcttcgctgtgttgttcattt
tctcaggatgcaattcctgtttttaagctgttgatgggatgctttaaatatatccgttgc
aacagtgcagaagacgtgactaatgtatcttatctcatggggactatagtggatgcattt
gttgcggttttgacccaactggctggtaatggtgtgctgattcatgaagcacaattaagc
ggagcagaacttttagagatggtgttttcactgtgcacagatattcacaagtattccggt
ggtgaagagtgcatatttgatatgtcaaggcgtttaatagttgttcaggcagaacttgat
ttgaaatgtatacccgaagcgtcatccgtgatgctgtcactatttgttagcctcattcag
tcagagctggaacacatacaattatcaatattaaagttggttctcgatcttataaagtgg
aaaaacagaaatgaggccgtagttgacgtgcatgaagagattttatttgtttttcctgcg
atcaatcttatgtcatctccttccaaatacgttaaagaagccgcatctgagttgcttatt
atcttacgaaagctttctgcaagtttcctggttacccccataaatgaattgctcatggaa
gaaagattcccacgtgtcagcagattggaagacatcatatttagggtctttcgtcatttg
tggttccaggatcaaaattttatttctgattctttttatctacaacggctattagttggc
cataaagttgtagaagaaaagcagaattccgttcaaacttggacagtcgcaacaacagag
tattgtaaaaggatggttgaaattaaaaaatcatcgcttccaaagtctcaggcaaacgag
atctttctacatgaaattctgccactgcttggtgcaattgccagtattctaattgtgcat
cctacgttgggggactctgcagtagaactcctagctgttactggcaatatggaccccaca
cttggtgttccgttgtttttagtaatattgttttaccataacatattctctggtaaatct
gaagaaatagactttcatgacaaattgcatttgctgcagctaaaacttttaagaatgctt
ccctctcttgtgtcacatcctgcaatgataccacttgtagttcagacaatcttgccaatg
cttcaaaaagatgcaaacccagtgttatatgctactgctttgcgtctgctttgtaagact
tgggagatcaatgatcgtgtattcggaagtttgcagggcttattacttccagaagcattc
accctgtttaagtatgagagaagtatctgtataagcacggctgttactattcgggatgtt
tgtcaaaaaaatcccgacaggggcgtagacattatcttgtcggttgaggcgtgcattgaa
agcacagatgctataattaaagctcttggtattcaaagcctttcccttctctgtgaagct
gatgtgattgatttttatactgcttggggtgtgatagcaaagtatgtctcgagttattcc
accgacccagttgttgcaaagaatgtatgcctgcttttaagatggggtgcaatggatgcc
gaagcatatccagaatatgcaacgggcgttatgcagataatatgggaagttgccacatcc
aaacaccctagtcatgtctcttcatgggcaaatgctagagcatctgcttttgaggcatta
actcgttatgaggtacctcatatccgacagttcataacggatttcagggaaaagaacaca
gaggcgcttgtttctgagattgaccccaaagttcttgaggccatggagaaatttgaaacg
aagataataacacacgaacacatcacaaggcggagactagtgaaggagaaaagagcgccc
gccaacaagattgagaaattgctagatgtctttcctcgggttattggtctttcaggaact
aataataaagtaagagaactacctggtgcagcactatttcacctttctttcagtgcaaaa
gataaaaataaccaaggaggatcaaaggctttgcacgatttacatggcagatatgagaat
gcattagtggagatagctgcatcactacagttgtcaaggaatacagtagtggcacttctt
tcactgcaatcttggaaaccgtttctgcaacgttggctgcggggttgcatcacgttattg
gatgttaaggcgtcctccagtgtgttggatacaacttccaaagcagctgatgatattctc
atgcgtatgacacaaacagctatgaaatctatccctagatctgctgagaatattggacta
gctgtgggtgcactttgtctggtccttccaccgtctgctcatgctacaaaagcaagcgcc
tccaagtttctactgagctggctatttcagcatgaacatgaatatcgacagtggtcggct
gcaatttcgcttggaatcatctcaagttgcttgcatgtgactgatcataaacaaaaatcc
caaaccatcaatgcacttcttgaggttgcgtgcatgagtaaaagcactctggtaagaggg
gcttgtggagttgctttaggttattcatgtcaagatcttcttacacgttttcaagcagga
gatgactacgagatgcatgaaactgaactacttggaaagattatcaggactttatgtcga
ttaatagatcagtatgcacaattttcaactaccactcttcaaaccctatctgaatacttc
cctcaagtaacaaacactactgatccatatattaccccaagtttttccaacaagagttct
gattacgtggaggaagatatatggggtgtttcaggactcatcattggtttaggaagttct
gttactgcaatatataggtcagggcgtatagacgcagctaagaaaataaaaaacctaatt
acatcatggattcctcttgaaaatcgctcaaaaccagttttatcaacgggtgcttgtctt
gcaattccgtttgtagtatctttttctcagaaagtagaactgattgacggtgcggagctg
gaatatcttgcgagtgggtatagagacctcattaacgaactggtttctaccaaaaaatcg
ggagcatttcgtcagagcttgttaatggcatcttgtgttggagctggtaattttcttgga
tgcgttttaaatgaagggatccattcactggatgccacgtgtgtcagggaattactggat
attttcaaaaaaatctactcaagttctcagcctccgctattgcatttgggtgcaatgctt
ggagttgtaaatgcattaggagctggcggtgggaccttgtttctgcactgccctttatcc
ttttcatcatctaattctaaacacaaggaatcttcttatgtaactggtcctttattctca
aattctgttatggagcttagtctgacatcattaatacaagacatctttcttgttgctcaa
aattctgatgacaaccaactgcaacactatgcatcttgggcagtttcttttcttcgacat
tacatctggtctagtgatcttcacaatgaagacagatcaaaacctaattctgcatcccaa
ccattccctgaggatagcgtagtcatgaaacttagcctgtggctaatgaatctaaacggc
tcagtgattgctaccccttcacacgccaacacagttgcaactgttctgcgatgtctcacc
aatgctccaaggttgccacagcttgattgggggccaatcattagacggtgcatgcgatac
gaggaacaggtttccgaaacatcacaaggagaatataatcttgaaaaccgaaaactgagg
gaggaatgtttagtattctctttggttcacggcagcaacttcgatgctttgcttactttt
ctcgatgagttgtttgacctctcgaggttcaaaatgcttgaaatgaatctacagttgtgc
atcctttctcacctgccacacacgttaaagatattctctggatctaggcttgaaaagtta
tttgacgatgtggcgaattttgtacagtcgcctttctcctctgacaaagtatatgatcct
gaactgaaaagcctgttaagaacatcttgctggaagggtgtttgcttgtgttttgaagaa
gcttatcttgattccgaaaaacttatgcccaactttgagaattatatggagttgctcttt
acattgttgcccgagttttcagggttacgatttttggaatatggcgggacttatgaaatg
gaggagtggtctgaagcagtaagatgtcttgggaaggctcctctccactggttattacat
cttctgcagattccggagacgagtttcaatcaggaaagccatcagtttttagatgcaaag
aaaaagatgatagctagagcaagactggtggagaatggttctattccgctaattgaactg
tcaaagctaaaaccttacatattaaatatcagatctgatggtatatgggacgttttggta
gaagtcgtgatggctttgcaacatgctgaaggaagtgtcaaacgacagtggcttgtttcc
gctgcagaaattagttgtgtcacaaattaccctacgacggctatgcagtttattggttta
ctatgtggtagctggtccaagtatatgcctcttctgattgtgaaccctcatattgtattg
agcgacctacccgtaacccttacttctctactgttagatgatactaactgggcagtagtg
gctgattcggtggtttcgcttatgtggacttcaaccaagcgtatatatgactatgtcact
aacactaatgacttttcaacccaagggtcacttgatgattcagagaaagacacgggtgtg
ttcctgttaaaggtgatgcatcatacttgtgttgctttcaaagaccatctgtctcctgag
gaacggctcatgcttgccaacttgactgttccctga
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integrated database retrieval system