KEGG   Helianthus annuus (common sunflower): 110878334
Entry
110878334         CDS       T05101                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110878334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110878334
   03036 Chromosome and associated proteins [BR:han03036]
    110878334
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110878334
Chromosome and associated proteins [BR:han03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     110878334
    COMPASS/SET1 complex (yeast)
     110878334
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_Nup120_160 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP WDR90_beta-prop_4th NBCH_WD40 Beta-prop_DCAF12 PQQ WD40_RFWD3 Beta-prop_VPS8 MIOS_WD40 WD_LRWD1 DUF2963
Other DBs
NCBI-GeneID: 110878334
NCBI-ProteinID: XP_021982315
LinkDB
Position
9:118580903..118588186
AA seq 330 aa
MMRNASVSELNDGIIRNMAIGALFSDFVGKINALDFHRTADLLVTTGEDDSVRLYDIANG
KLLKTTHHKKHGADRICFTHHPSSVICSSTRNIDSGGEALRYLSMYDNRCLRYFKGHKDR
VVSLCTSPVDDSFMSGSLDHSVRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVSMEGG
AIKLFDSRSYDKGPFDTFLVGGDMAEIWDIKFSNDGKSMLLTTKSNNIYVLDAYNGEKRC
GFSVDASPNTTIEATFTPDGQYVVSGSGDGTLNAWSISTGSKVGSWDSNIGVASCLKWAP
RRVMFAAASKGVLTFWIPKDANSTATSFER
NT seq 993 nt   +upstreamnt  +downstreamnt
atgatgaggaatgcatcggtgtctgaactcaacgatggaatcatccgcaatatggcaatt
ggcgcactgttttcagatttcgttggaaagataaacgcacttgattttcatcgtactgcg
gatcttttggtaacaacgggggaggatgattctgtgcgactatatgacatagcaaatggc
aagttactgaaaactacacaccataagaaacatggtgccgatcgtatatgttttacccac
caccctagttctgtcatatgctcttcaacacgcaatatagattcaggtggagaggctttg
cgttatctctccatgtatgacaatcgttgccttcgttacttcaaggggcataaagatagg
gttgtgtccctatgtacatctccagttgatgacagcttcatgtccggttctcttgatcac
tctgtcaggatatgggatttgcgtgtgaatgcgtgccaggggattttacatctaagaggt
agacctacagttgcgtatgaccaacaaggccttgtctttgctgtatcaatggaagggggt
gctatcaagttatttgattcacgctcatatgataagggcccatttgacacctttcttgtg
ggaggagatatggcggagatctgggatataaaattcagcaatgatggcaaatcgatgctt
ttgactacaaaaagtaacaacatatatgttctagatgcgtataatggcgagaagagatgt
ggattcagtgtggatgcttctccaaacacaacaattgaggcaacatttacgcctgatggc
caatacgtagtttcaggctctggagatggaacgttgaatgcttggagcatctccaccggt
agcaaggtggggagttgggacagcaacataggtgtggcgtcatgcttgaaatgggcacct
cgtcgggtcatgtttgctgctgcttctaagggggttcttactttttggataccaaaagat
gcaaattcaactgctactagttttgaaagataa

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