Helianthus annuus (common sunflower): 110878438
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Entry
110878438 CDS
T05101
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110878438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110878438
03036 Chromosome and associated proteins [BR:
han03036
]
110878438
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110878438
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110878438
PBAF complex
110878438
GBAF(ncBAF) complex
110878438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
110878438
NCBI-ProteinID:
XP_021982430
LinkDB
All DBs
Position
9:121273316..121275674
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AA seq
537 aa
AA seq
DB search
MSMNNNTPQKNSPFGNSMTTNPSSHLQSQSQPQQQSGSPFASQFQLSQYAAAHAHAQAIA
QAQSKAQAQAMAQAQANHAQFQAQLQAQGMSLNQSHGHFSGNSPSFPGLANSGIKRMPQK
PVGRPPGVSNANTISPMRMMELTPAQRNKKKQKLPEKQLLERVAKILPQSALYTELLEFE
SRVDAALARKKIDIQDAIKNPPCIQKTLRIYVFNTFANQTRVSPMKPNDEPPTWTMKIIG
RILEDDMHPDQAATLSTMYPKFSSFFKRVTISLDQRLYPDNHMIVWDSARSPTPQEGFEV
KRKGDKEFTANIRLEMNYMPEKYKLSLALMEVLGIEVDTRARIIAAIWHYVKARKLQNAD
DPSYFNCDPALRKVFGEDKVKFAMVSQKISPHLSAPQPIHLEHKIKLSGNSPVGNACYDV
LVDVPFPVQRELNALLAATEKAKEIEACDEAICTSIRKINEHRKRRAFFLGFSQSPVEFI
DALIESQGRDLKLAAGEASRNAEKEARAEFYNQPWVEDAVIRYLNRKPANTGVHGST
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaacaacaatactccccaaaagaattcaccttttgggaactctatgactaca
aaccctagttcccatctccagtcacagtcacagcctcaacaacaatcagggtctcccttt
gctagtcagtttcagctctctcagtatgctgcagcccatgcccatgctcaggccatagct
caagcgcagtccaaagcgcaggctcaagccatggcccaggctcaggctaaccatgcccag
tttcaggcacagttgcaggctcaaggaatgtcgcttaatcagtcacatgggcatttttct
ggtaattcaccgtcttttcctggattggcgaattccgggatcaaacggatgcctcagaag
ccggttggacggccgcctggggtgtcaaatgctaatactatttctcccatgaggatgatg
gagcttacgccagctcagcggaataagaagaaacagaagcttcctgagaagcagttgctc
gaaagggtggctaagattttaccacagtctgcactttatacagagcttcttgagtttgag
tcgcgtgtggatgctgcgttagcgagaaagaagatagacattcaagatgcgattaaaaac
cctccttgcatccagaaaacgcttagaatatatgttttcaacacttttgcaaaccagact
cgtgtaagcccgatgaagcccaacgacgagccccctacttggacgatgaaaataataggt
agaatcttggaagacgatatgcatcctgatcaagctgcgacattgagcaccatgtacccc
aagttttcatcttttttcaagagggtgactatttcgttagaccagaggttatatccggat
aatcatatgatcgtgtgggatagtgcgagatctccaacaccccaggaaggcttcgaggtg
aaacgaaaaggggataaagaattcaccgcaaatatacggttggaaatgaattacatgccc
gagaagtacaagctttcgttagctctaatggaagttctcggaattgaggtggatactcgt
gccagaattatagctgcaatttggcattacgtgaaagctagaaaattgcagaatgcggat
gacccgtcatattttaactgtgatcctgctcttcggaaagtattcggtgaggacaaggtt
aaattcgcgatggtctcgcagaaaatctctcctcatttgtctgcaccacagcctatccat
ttggaacataagattaaactttcgggaaatagtccagttggaaatgcgtgttatgatgtg
ttggtggatgtcccgtttccagtacaaagggaactgaatgctttactagctgctactgag
aaagctaaagagattgaagcttgtgatgaagcgatatgtacttcaattaggaagattaat
gaacatcgtaaaaggcgagcttttttccttgggtttagtcagtcacctgttgagtttatc
gatgctttgattgaatcgcaaggaagagatctgaagcttgcagcaggggaagcaagccgt
aacgctgaaaaagaagcccgtgctgagttctacaatcagccatgggttgaagatgcagtt
atccgttacctgaatcgcaagccagctaatacaggcgttcatggaagtacataa
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