Helianthus annuus (common sunflower): 110879305
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Entry
110879305 CDS
T05101
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110879305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110879305
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110879305
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110879305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
110879305
NCBI-ProteinID:
XP_021983430
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All DBs
Position
14:complement(100694095..100702405)
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AA seq
848 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKAKPPRLTHLESSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKEFIDDYVERNQEDFDEFEDVDMLYNTLSLDMVDA
LEDLVSIVPPGLVKGVGATSVALSMKNSVSSPSVQSPVATVPDQVEETLSHDNSSDHGPK
TPAPKASTILSSSPLPVGTHAATPVAAAAASSILTGQSPARGILDNTVSTVPSSPVSKEE
DVGGFPGRKSSPAFNLGRGSLTLTNPSSITTSSNISTNSVAVAPSVSERVSGMVHQSPVS
SLSNRMMLSQGGAKTSDGGDNGNGGDASGMTPRVFSPSGLQWRPGSPFQNQHEGARGRPE
IAPDQREKFLQRFQQVQQQTQSNTLLNMPPISGGNHKQFSAQQSALLQQFNPQSSTVLPQ
GGLGGALSAGPNNVTSAQQPSLIHLQSGQQTFMPAGSKDTEIGNAKADEMEQQQNLPEDS
AADPAQIAGINKNAANEEDSKVSYASDMQGGASGSMTEPAQSTRDVDLSPGQPLQPNQSG
SLGVIGRRSLSDLGAIGDNLGGLPVNLGGTHDQQYNLQMLEAAFYKLPQPRDSERAKSYT
ARHPAVTPQSYPQVQAPIVNNPAFWDRLGSDNIGTDTLFFAFYYQQNTYQQYLAAKELKK
QSWRYHKKYNTWFQRHEEPKFATDDFEQGTYVYFDFHIGNDEMQNGWCQRIKTDFKFEYN
FLEDELIV
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtagaaagcttcaaggtgagatcgatcgagttttgaagaaagttcaagaa
ggcgttgatgttttcgacagcatatggaacaaggtttacgacactgataatgcgaatcag
aaggagaaatttgaagcagatttgaagaaagagattaagaaacttcagaggtatagagac
cagattaagacatggatacagtccagtgagatcaaggataaaaaggttagtgcctcttat
gagcaggctttaatggatgcgcgcaagcttattgagcgtgaaatggaacggtttaagatt
tgtgagaaggagacaaagacaaaagctttctctaaggaaggcctgggacagcagcctaaa
acggatccaaaggagaaagccaagtcagagaccagagactggttgaacaatacggtgtct
gagctggaatctcaaattgatagttttgaagccgagatggaggggctgtctgttaagaaa
ggaaaggcaaaacctcctagattgacacatttagaatcatcaattactcgtcacaaggct
catataatgaagctagagttgatattgaggctgttagataatgacgaattgagtcctgag
caagttaatgacgttaaggaattcattgatgattatgtggaacgaaatcaggaggatttt
gatgaatttgaggatgtagatatgctatacaacaccttatcattggacatggtagatgca
ttagaagatctggtttccattgtgccacctggtcttgttaagggtgttggtgctaccagt
gttgctctaagtatgaaaaattctgtgtcttcaccttctgttcaatcaccggtagctaca
gtcccggatcaagtcgaggaaacgctgtctcacgacaatagttcagatcacgggccgaag
accccagctccaaaagccagtacaatcttgtcttcttctccattgccagttggcactcat
gcagctactcctgttgctgctgctgctgcttcttcaatccttacaggtcaaagtcctgcc
aggggtattttagacaatacagtctccaccgttccttcttcacccgttagcaaggaagaa
gacgttggaggatttcctggtcgtaaatcatctccagcttttaatctgggtagaggcagt
ttgactttgacaaatccgtcttcaattactaccagtagtaatatttctaccaatagtgtt
gctgttgctccttcggtttctgagagagttagtggcatggtacaccaatcaccggtttcg
tctttgagtaacagaatgatgttgtcgcaaggtggcgccaaaaccagtgacggtggtgat
aatggcaacggtggtgacgctagtggtatgacccctagagtcttctcaccttctggatta
cagtggaggcctggaagtccctttcaaaatcagcatgaaggggcacgtgggagacctgaa
attgcgccagatcagagggagaagtttctgcagcgttttcagcaagtgcagcaacaaact
cagagtaatactctccttaacatgcctccgatttctggaggaaaccacaaacaattctca
gcacagcagagtgctcttttgcaacagttcaatcctcaaagttcaacagtgttgccacaa
ggtgggttgggtggagcattgtctgcaggtcctaacaatgtcacatctgcacaacaaccg
agtttgattcatttgcagtctggtcaacagacatttatgcccgctggatctaaagatacc
gaaattggcaatgcaaaggctgatgagatggagcaacagcaaaacctgcccgaagattca
gctgctgatccggctcaaattgctggaattaacaagaatgctgcgaatgaggaagattca
aaggtgtcatacgcatcagatatgcagggcggagcatctgggtccatgaccgagcctgca
caaagtacacgcgatgttgatctgtcacctggacagcctttacaaccgaatcagtctggt
agccttggtgtaatcggtagaagaagcctttcggacctcggtgcaatcggagacaacctc
ggtgggttaccggtgaacttaggtggcactcacgatcagcaatacaacctacagatgctc
gaggctgccttttacaaacttccgcaacctagagactctgaacgggccaagagttacact
gcaagacaccctgctgtgacacctcaaagctatcctcaagtacaagctccgattgtgaat
aacccggccttttgggatcgtcttggatctgataacatcggcaccgataccttatttttt
gcattctactatcagcagaatacttatcaacagtatctggctgccaaagagttaaagaag
caatcatggaggtaccataaaaagtacaacacgtggtttcaacgacacgaggaaccaaaa
tttgccactgatgattttgagcagggaacatacgtgtacttcgattttcatattggcaac
gatgagatgcaaaatggatggtgccaaagaatcaagacggacttcaaattcgagtacaac
tttcttgaagatgaactaatcgtgtaa
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