Helianthus annuus (common sunflower): 110879351
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Entry
110879351 CDS
T05101
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03420
Nucleotide excision repair
han04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110879351
09124 Replication and repair
03420 Nucleotide excision repair
110879351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
han04121
]
110879351
03400 DNA repair and recombination proteins [BR:
han03400
]
110879351
Ubiquitin system [BR:
han04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110879351
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
110879351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
NBCH_WD40
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
110879351
NCBI-ProteinID:
XP_021983488
LinkDB
All DBs
Position
9:163501733..163505525
Genome browser
AA seq
447 aa
AA seq
DB search
MWKKIGDRESGKLRPNSFITRIRSNRASSLHLSNHKELVSSHRGSVNSLQVDLTEGRYLL
SGAADASLAIYDIQRATDYEAGGLIAKHKPILVDKQHQNAHKYAISTAIWYPIDTGLFVT
GSYDHHIKVWDTNTTQVVMDFKMPGKVYRTAMSSLATSHMLIAAATEDVQVRLCDMASGA
FAHTLSGHRDGVMAVEWSTSSEWILMTGGCDGAIRFWDIRRAGCFSVLDQSHSQLGRRPP
LADKSTTKVSTSKARAPPRKVGSGSSSKHSGNSKIIKQTKGSAKQRLHPGLLTSQDRATA
HYGAVLGLKATEDGMYLLSAGSDSRLRLWDIQSGCNTLVHYEIVRLQSSKAIQLDVSQDS
GVVFLPCMTSIKAFDMWSGKSKMTLQGHYENVNCCCYSSHDQELYTGGNDRQILIWSPLK
QIPADVQDECDRSTGQPLAADEDNWSD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagaagatcggagatagagaatcgggaaaacttcgccctaattccttcatcact
cgtattcgatcgaacagagcatcgtctcttcatctctccaatcacaaagagcttgtctct
tctcaccgtggctccgttaattccttacaggttgatttgacagaagggagatacctgtta
tctggagcagccgatgcatcacttgctatatatgatattcaacgtgcgacagactatgag
gcaggtggtctgattgctaagcataagcctatactagttgacaagcagcaccaaaatgcg
cataaatatgccatatccacagccatatggtatccaatcgatacaggtctttttgtcaca
ggttcatatgatcaccacatcaaggtttgggataccaataccacacaggtggtgatggat
tttaaaatgccaggaaaggtttatagaactgccatgtcatcgttagccacatcccacatg
cttattgctgctgcaactgaagatgttcaggttcggctttgtgatatggcttcaggggca
tttgctcacacattatctggtcatcgtgatggcgtaatggcagtggagtggtcaacttct
agcgagtggattttaatgacgggtggctgtgatggagcgatacgtttttgggacattaga
cgtgcaggatgtttttctgttttagatcaatcacactctcagcttggaagacgtccacct
ctagctgacaaatccactactaaggtttcaacgtctaaggctcgggcaccaccaagaaaa
gtaggttctggaagtagctcaaagcactctggtaacagcaagattattaaacagacaaag
ggatctgctaagcagagactccatcctggattgttgactagtcaagatcgagctactgct
cattatggtgctgttttgggtctgaaagcgaccgaggatggcatgtatcttctaagtgca
gggtctgattcaaggttaaggttgtgggacatacaatctggttgcaatacgcttgtgcac
tatgagattgtgcgtctgcaaagtagcaaggcaatacagttggacgtgtctcaggattca
ggcgttgtctttcttccatgcatgacttctataaaagcatttgatatgtggtcgggtaag
agtaagatgacacttcaaggacactatgagaatgtaaactgttgttgctatagctcccat
gatcaggaactatacacaggtggtaatgatcgacaaatccttatctggtctcctctcaag
cagattcctgctgatgtgcaggatgaatgcgatagaagtacagggcaacctcttgcagct
gatgaggataactggagtgactga
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