Helianthus annuus (common sunflower): 110879639
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Entry
110879639 CDS
T05101
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110879639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
han03041
]
110879639
Enzymes [BR:
han01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110879639
Spliceosome [BR:
han03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110879639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
T2SSE
AAA_30
nSTAND3
PWI
SRP54
AAA_7
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110879639
NCBI-ProteinID:
XP_021983844
LinkDB
All DBs
Position
9:174047239..174055265
Genome browser
AA seq
1043 aa
AA seq
DB search
MGSDLKTWVSDKLMSLCGYSQPTLVQYVISLSKKASSSSDVFNNLKDMEVSSLNDLRTFA
DEIFRKVEHKSSGPNLYRQEEEAAAKLARQQRTYKLLEDDDDDGGEPGNSVKSKKKDKKE
KSFRKKSEIQEDEDDEGAVNLKEERRVKQKVTHDESDGSESEEERLRDQKEREELERHLR
EKDAARTTKLTEQKLSKREEEEAIRRANALADDDMHTLRKASRQEYLKKREQKKLEEIRD
DLEDEQYLFGNVKLTEAEEREYRYKKQIYDLVKKRSQEDDNINEYRMPDAYDEEGGVNQE
KRFAVAMERYRDSKDGDKMNPFAEQEAWEEHQIGKATLKYGSKNKTQSEDYDYVFEDQIE
FIQGQVMGGENVDNEAYQEEQEKSMAKSAHEKLLADRKTLPVYPYRESLLKAVEDHQVLV
IVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMNVKLGHEVGYS
IRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIA
RFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINYTKAPEADYLDAAIVTAL
QIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGSKIAELIICPIYANLPTELQAK
IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLITPISKAS
ANQRAGRSGRTGPGKCFRLYTAYNYFNDLDDNTVPEIQRTNLANVVLSLKSLGIHDLLNF
DFMDPPPAEALLKALELLFALSALNKHGELTKVGRKMAEFPLDPMLSKMIVASDKYQCSD
EIISIAAMLSIGSSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWKETNFSTQW
CYENYIQVRSMKRARDIRDQLEGLLERVEIELQSNPGDLEAIKKSITSGYFPHSAKMQKN
GSYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVSELKPEWLVEIAPHYY
QLKDVEDLASKKMPRGQGRAAKD
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgacttgaagacttgggtatccgataagttgatgtctctatgtggatattca
caacctaccttggttcaatacgtcattagtttatctaagaaagcttcatcatcttctgat
gtgtttaataatcttaaagacatggaggtgtcatctttaaacgacttacgcacatttgct
gatgaaatctttcggaaggttgaacataagagttccgggccaaatctttatcgacaagaa
gaagaggctgcagcaaagctagcccggcagcagaggacttacaagctactggaagatgat
gatgacgacggtggtgaacctggcaactctgttaagtctaaaaagaaggataaaaaggag
aaaagtttcagaaaaaagagtgaaatccaagaagatgaagatgacgagggagctgtaaat
ttgaaagaagaaagacgagtgaaacaaaaagttacccatgacgaatcagatggttctgag
tccgaagaagaaaggctgcgtgaccaaaaagaacgagaggagttggagcgccatctaagg
gaaaaagacgctgcaaggacgacaaagctgacagagcagaaattatccaagagggaggaa
gaagaggcaattaggagagccaatgccctggcagatgatgacatgcatactttaaggaaa
gcttcgaggcaggaatatcttaagaaaagagagcagaagaaattggaggaaattagagat
gatcttgaagatgaacagtatctatttgggaatgtcaaattaacagaagctgaagagcgt
gagtacagatataaaaagcaaatatatgacctggtgaagaaacggtctcaagaggatgat
aacattaacgagtatcggatgcctgatgcttatgatgaagagggtggtgtaaatcaagag
aaaagatttgctgtagctatggagcgctacagagactcgaaagatggagataagatgaac
ccgtttgctgaacaagaagcatgggaggagcatcagattggaaaagcaacactaaaatac
gggtcaaagaacaaaacgcagtctgaagattatgattatgtgtttgaggaccagatcgag
ttcatacagggtcaagttatgggcggtgaaaatgttgataatgaagcatatcaagaggaa
caggaaaaatctatggcaaaatcagcacatgagaagcttctggcagacagaaaaacttta
cctgtatatccctatcgggagtcattgcttaaggctgttgaagatcatcaggttcttgtc
attgtcggtgagaccggctctgggaagaccactcagataccccaatatcttcatgaagct
ggatacactaagcgtggaatgatcgggtgtacacagcctagacgagttgctgctatgagt
gttgctgctagagtttctcaagaaatgaacgtcaaacttgggcatgaggttggctattca
atacggtttgaagactgtacttctgacaagacagtactgaaatacatgactgatggcatg
ttactacgagagtttcttggtgaacccgatcttgcaagttacagtgtagtgatggtggat
gaggctcatgagagaacattgtcaaccgatatcttgttcggtttagttaaggatatagcg
cggtttcgtcccgatctcaagttgctcatttcaagtgccactcttgatgcagagaaattc
agcgactattttgattctgctccaatttttaaaattccaggaaggcgatatcctgtagaa
attaattacaccaaagcaccagaagctgattacttggatgctgcgatcgtcactgctctt
cagattcacgttactcagccacctggcgatggcgacatactcgtctttctcactggtcag
gaagaaatagaaacagccgaagagatcctgaaacaccgaacgagaggattagggagtaaa
atagccgaactgataatatgccccatttatgcaaatctcccgacagaacttcaagcaaag
atatttgagcctacacctgaaggggcccgcaaggtggttcttgctacgaatattgcggaa
acatcactaacgattgatggtatcaaatacgtgattgacccgggctttgtgaagatgaag
tcttacaaccctcgtacgggaatggaatcgttactcatcacacctatctcaaaagcatct
gcaaatcaacgggcgggtcgatctggacgaacggggcccgggaagtgctttagattgtat
accgcttacaactattttaacgatttggatgataacacggtcccagagatccaacgaacc
aaccttgctaatgttgttctcagtttaaagagtctagggattcatgacttgttgaatttt
gattttatggacccaccaccagctgaggcattactcaaagctttggagctgctttttgcc
ttaagtgcactcaataaacacggtgaattgacaaaagtgggtagaaagatggcggaattc
ccgcttgatccaatgttgtcgaagatgattgttgcatctgacaagtatcaatgctcagat
gagatcatttcaattgctgctatgttgtcaattggaagttccattttctatcgtccaaaa
gataaacaagttcatgcggataacgctcgtttgaattttcatatgggtaacgtcggagat
cacatagcactgcttaaggtttacagttcgtggaaagaaacgaacttttctactcagtgg
tgctatgagaattacattcaggtgaggagtatgaagcgtgcacgagacataagagatcaa
ctggaagggcttttagaaagagttgaaatcgagttacaatcaaaccctggcgatttggaa
gcaattaagaagtccataacctcaggatacttcccccactcagcaaagatgcaaaagaac
gggtcttacagaactgttaaacatccacaaactgtttatattcaccccagctctggtttg
gctcaggtacttccaaggtgggtggtttaccacgagctagtgctgacaactaaggagtac
atgcgacaagtgagcgagctaaaacccgagtggcttgtggaaattgcacctcattattat
cagctcaaggatgtcgaagatttggcatcaaagaaaatgccacgcggacaaggccgggca
gccaaggattga
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